PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G278300.2.p
Common NameSb03g033020, SORBIDRAFT_03g033020
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 352aa    MW: 39039.7 Da    PI: 8.6025
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G278300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix32.32.6e-1074165185
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr...tsessstcpy 81 
                           +Wt++ + aL++a  +   r +r+  ++  W ev++++     r  g+  s  qC+++ + l+k++kk++e+++     +  s s+++y
  Sobic.003G278300.2.p  74 KWTERSTFALLDAWGDSFVRAGRSIIRADEWLEVARRVcaaadRPAGY-FSDSQCRNRVDTLRKKFKKERERARLAnrrSGLSPSKWVY 161
                           7*************************************9996444444.5999*****************998754212577889**** PP

              trihelix  82 fdql 85 
                           +d++
  Sobic.003G278300.2.p 162 YDKM 165
                           **99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-1573167No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSDDAAAAAS PSPSTSPSPS SASSSGASPS PSSPRTKRRR TDRYALGFEF APRLAPYELP  60
EDPLSDKPKR SGPKWTERST FALLDAWGDS FVRAGRSIIR ADEWLEVARR VCAAADRPAG  120
YFSDSQCRNR VDTLRKKFKK ERERARLANR RSGLSPSKWV YYDKMVSILC PSPLPLPLPA  180
PPPPPPQLPL QLLPLAAKRR RDRQPSRCFQ WGMKAPERLL GGGGDVVGPR VSGSGAELGE  240
REPQKNNAVE LNRNGFVALT ESIQKFEEVF ARMERSKRQQ MLEVEQMRRD LHRDLDAKWR  300
EILEKAQVEI ARLSNEDGDE GDSDEDGDVG DDKRLEDDGA EQNNGAMDAS P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G278300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0409250.0BT040925.1 Zea mays full-length cDNA clone ZM_BFc0153A15 mRNA, complete cds.
GenBankBT0608890.0BT060889.1 Zea mays full-length cDNA clone ZM_BFb0066D07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458413.20.0trihelix transcription factor ASIL2
TrEMBLA0A1W0VZ680.0A0A1W0VZ68_SORBI; Uncharacterized protein
STRINGSb03g033020.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-12Trihelix family protein