PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G273300.1.p
Common NameSb03g032530, SORBIDRAFT_03g032530
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 281aa    MW: 30702.2 Da    PI: 10.1315
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G273300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.2e-12556147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                          +++WT eE++ l  +v+++G g W+tI +          R+  ++k++w+++
  Sobic.003G273300.1.p  5 KQKWTSEEEDALRAGVRKHGAGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                          79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.768160IPR017930Myb domain
SMARTSM007174.4E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-14556IPR009057Homeodomain-like
PfamPF002491.7E-8556IPR001005SANT/Myb domain
SuperFamilySSF466893.98E-14659IPR009057Homeodomain-like
CDDcd116602.54E-21656No hitNo description
SuperFamilySSF467854.08E-15110193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.5E-17111176IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.3E-13111189IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150426.617113181IPR005818Linker histone H1/H5, domain H15
PfamPF005387.9E-10115173IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGAPKQKWTS EEEDALRAGV RKHGAGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
SGLGSSKVRV PRITGPTSSP SPSAQALLLP APNKVTEATL PADAEKKPQD GKTPPKYGVM  120
IMEALSELNE PNGSDMAAIL RFIEERHVVQ PTFRRFLTSK LRRLADSNKI VKIDKSYRLP  180
DSFATRTPAP KQKDPSKPSK VSKTIGLFTA SSPALEAAMA AAVKVADAEA KAHDAHDQMM  240
EAERILKMAE DTESLLTIAV EIYDRCLRGE ITTIVAQRDV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.62240.0embryo| root
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G273300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2806290.0AY280629.1 Zea mays single myb histone 3 (Smh3) mRNA, complete cds.
GenBankBT0538360.0BT053836.1 Zea mays full-length cDNA clone ZM_BFb0224E01 mRNA, complete cds.
GenBankEU9628380.0EU962838.1 Zea mays clone 245910 single myb histone 4 mRNA, complete cds.
GenBankJX4699130.0JX469913.1 Zea mays subsp. mays clone UT3162 MYB-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456231.10.0single myb histone 4
SwissprotQ6WLH41e-160SMH3_MAIZE; Single myb histone 3
TrEMBLC5XHN50.0C5XHN5_SORBI; Uncharacterized protein
STRINGSb03g032530.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.26e-48MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]