PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G273200.2.p
Common NameSb03g032520, SORBIDRAFT_03g032520
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 419aa    MW: 42658.2 Da    PI: 6.7151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G273200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.44e-06301341954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  Sobic.003G273200.2.p 301 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 341
                           599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.21E-10283346No hitNo description
PROSITE profilePS5088814.449292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-13298351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-12298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-9301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDATFGWAGA GHHVDEYFSR QAAAGCSRFD MDEAFLGVCF GQLQCDGALI GGGGGDAGAC  60
QVSSNACAIE GGGAGMDGDP LAFLSAGTGD VFDAGLLDAA LAFTRELGYG GAVSNGGAML  120
SSYSGTTGGN ISSGESNNYS GGGGGGHDAE VVSPTSIMSQ TTTAPPPLTF THASSHSQQA  180
AHGHRVKRKV DVSDEFPATA IATTTTTAPP PAPFPRPAGG GAKRRAAATS ISFGGGAHVA  240
RDPSAGYEPD MEAMAQVKEM IYRAAAMRPV NLGPEVIAAA AAEKPRRKNV RISSDPQTVA  300
ARLRRERVSE RLRVLQKLVP GGSKMDTASM LDEAASYLKF LKSQVQALET LGTTNDTSTS  360
NSTATASRSQ QYNYYSSGSN NPGGFLGFAA GRSSNMISPA GYVNPTIGSS NTSSKLLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282288EKPRRKN
2283288KPRRKN
3301306RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.182380.0embryo| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G273200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0854973e-93BT085497.2 Zea mays full-length cDNA clone ZM_BFc0022I20 mRNA, complete cds.
GenBankBT0857063e-93BT085706.2 Zea mays full-length cDNA clone ZM_BFc0049P14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311298.10.0transcription factor bHLH84
RefseqXP_021311299.10.0transcription factor bHLH84
TrEMBLA0A1B6Q5M60.0A0A1B6Q5M6_SORBI; Uncharacterized protein
STRINGSb03g032520.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-35bHLH family protein