PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G252200.4.p
Common NameSb03g030770, SORBIDRAFT_03g030770
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HB-other
Protein Properties Length: 1187aa    MW: 133694 Da    PI: 6.2487
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G252200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-17453857
                          -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
              Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                          t++qle+Le+ ++ ++yps+++r eL++k+gL++rq ++WF+ rR k++k
  Sobic.003G252200.4.p  4 TPYQLEVLEKTYAAEQYPSEAMRLELSAKIGLSDRQLQMWFCHRRLKDRK 53
                          89**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.305154IPR001356Homeobox domain
SMARTSM003891.5E-11258IPR001356Homeobox domain
CDDcd000861.75E-13354No hitNo description
Gene3DG3DSA:1.10.10.604.5E-16353IPR009057Homeodomain-like
SuperFamilySSF466891.03E-14353IPR009057Homeodomain-like
PfamPF000462.1E-15453IPR001356Homeobox domain
PROSITE profilePS5082715.468543602IPR018501DDT domain
SMARTSM005711.4E-18543602IPR018501DDT domain
PfamPF027912.7E-16545599IPR018501DDT domain
PfamPF050663.7E-16718786IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156124.9E-10942984IPR028942WHIM1 domain
PfamPF156136.7E-611211168IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1187 aa     Download sequence    Send to blast
MMKTPYQLEV LEKTYAAEQY PSEAMRLELS AKIGLSDRQL QMWFCHRRLK DRKPPAKRQR  60
REEESALAPV MPPPPVLPAP VSVMPLASSD HMVGAPGPYD EPLHPVHSRR GAGRSSAVPR  120
ISMPDIGRRY YEPTPIMIAP AIPSMQLTQS ELRVINSVES ELGEPLREDG PALGIEFDPL  180
PPGAFGAPIV PEQQKQPVRS YNTKMFSRHD QKLLKASAFL PTMESPSVPN SFTGKRKSTV  240
GNSPIVQPHV GSRAVHEYQF LPEQPSDTYE RASRSHYYDT PVEVSNSRIS SLTSGSQLLH  300
GSEVAAPSYA FQGHTSGSSL MPQSSRSQVA AFENPLISYE RRAYHDEDTS RVERKRKHNE  360
EAKIAKEVEA HERRIRKELE KQDILNRKRE EQRRKEMERL DRERRKEEER LLRERQREEE  420
RFQREQRREH ERMEKLLQKQ SRRAEKQRQK EELRKEKEAA RQKAANERAT ARRIAREYME  480
LVEDERLELM ELAAQNKGLP SMLHLDSDTL QQLDSFRGML RQFPPATVRL KLPFSIKPWT  540
GSEDNVGKLL MVWKFFITFT DVLGLCPVTL DEFVQSLHDY DSRLLGELHV ALLKSIIKDI  600
EDVARTQSIA LGVNPGGHPQ IVEGAYAWGF NIRSWQRHLN LLTWPEILRQ FALSAGFGPQ  660
LKKRTVEDSY YRNDNEGHDG ENVISTLRNG SAAVNAAAKM KERGYTNRRR SRHRLTPGTV  720
KFAAFHVLSL EGSKGLTILE VAEKIQKSGL RDLTTSKTPE ASIAAALSRD TKLFERTAPS  780
TYCVKSPYRK DPADSEAVLS AAREKIRAFQ NVLSDSEAEK EADEAERDDD SECDDADDDP  840
DGDDVNTEVE DDKDPPLAVK AQDEVPSTTT VIGIRSELDS VGNALNSSSS FTKSAKGTPL  900
PSLGKSDAAD TSNDSPLGGS SANHEVAPGD SENTQIDESN QVEPWVRALA EGDYYDLSVE  960
ERLNALVALV GVATEGNSIR GVLEERLELA NALKKQMWAE AQLDKRRSKE EFASRVQYNS  1020
DMGLKADIYQ ENNATEISST PACDVYKEND GHVGTINSCE MDDQHNQGNF GSMAYERNGI  1080
GQEILATPDT SYVQQYAYAD KTRSQLKSYI GHRAEQLYVY RSLPLGQDRR RNRYWQFTTS  1140
ASPNDLGSGR IFFESKDGCW RVIDSEEPPV NPSFDGSSHH CSRSSL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G252200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312476.10.0homeobox-DDT domain protein RLT2 isoform X2
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A1W0VYV10.0A0A1W0VYV1_SORBI; Uncharacterized protein
STRINGSb03g030770.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.20.0Homeodomain-like transcriptional regulator