PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G252200.2.p

Common Name

Sb03g030770, SORBIDRAFT_03g030770

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

HB-other

Protein Properties

Length: 1824aa MW: 203409 Da PI: 5.2911

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G252200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3e-18	57	111	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ ++yps+++r eL++k+gL++rq ++WF+ rR k++k Sobic.003G252200.2.p 57 KRMMKTPYQLEVLEKTYAAEQYPSEAMRLELSAKIGLSDRQLQMWFCHRRLKDRK 111 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.24E-16	41	111	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-17	42	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.034	52	112	IPR001356	Homeobox domain
SMART	SM00389	2.9E-17	54	116	IPR001356	Homeobox domain
CDD	cd00086	2.56E-14	57	112	No hit	No description
Pfam	PF00046	4.5E-16	57	111	IPR001356	Homeobox domain
SMART	SM00571	1.4E-18	601	660	IPR018501	DDT domain
PROSITE profile	PS50827	15.468	601	660	IPR018501	DDT domain
Pfam	PF02791	4.5E-16	603	657	IPR018501	DDT domain
Pfam	PF05066	6.1E-16	776	844	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	7.9E-10	1000	1042	IPR028942	WHIM1 domain
Pfam	PF15613	3.5E-12	1179	1249	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1824 aa Download sequence Send to blast
MDAGGDGDGD GAGKAALEAP AEATTPPPAP VAAPAPVSAS TAAAGAGTSG SGEKPVKRMM 60 KTPYQLEVLE KTYAAEQYPS EAMRLELSAK IGLSDRQLQM WFCHRRLKDR KPPAKRQRRE 120 EESALAPVMP PPPVLPAPVS VMPLASSDHM VGAPGPYDEP LHPVHSRRGA GRSSAVPRIS 180 MPDIGRRYYE PTPIMIAPAI PSMQLTQSEL RVINSVESEL GEPLREDGPA LGIEFDPLPP 240 GAFGAPIVPE QQKQPVRSYN TKMFSRHDQK LLKASAFLPT MESPSVPNSF TGKRKSTVGN 300 SPIVQPHVGS RAVHEYQFLP EQPSDTYERA SRSHYYDTPV EVSNSRISSL TSGSQLLHGS 360 EVAAPSYAFQ GHTSGSSLMP QSSRSQVAAF ENPLISYERR AYHDEDTSRV ERKRKHNEEA 420 KIAKEVEAHE RRIRKELEKQ DILNRKREEQ RRKEMERLDR ERRKEEERLL RERQREEERF 480 QREQRREHER MEKLLQKQSR RAEKQRQKEE LRKEKEAARQ KAANERATAR RIAREYMELV 540 EDERLELMEL AAQNKGLPSM LHLDSDTLQQ LDSFRGMLRQ FPPATVRLKL PFSIKPWTGS 600 EDNVGKLLMV WKFFITFTDV LGLCPVTLDE FVQSLHDYDS RLLGELHVAL LKSIIKDIED 660 VARTQSIALG VNPGGHPQIV EGAYAWGFNI RSWQRHLNLL TWPEILRQFA LSAGFGPQLK 720 KRTVEDSYYR NDNEGHDGEN VISTLRNGSA AVNAAAKMKE RGYTNRRRSR HRLTPGTVKF 780 AAFHVLSLEG SKGLTILEVA EKIQKSGLRD LTTSKTPEAS IAAALSRDTK LFERTAPSTY 840 CVKSPYRKDP ADSEAVLSAA REKIRAFQNV LSDSEAEKEA DEAERDDDSE CDDADDDPDG 900 DDVNTEVEDD KDPPLAVKAQ DEVPSTTTVI GIRSELDSVG NALNSSSSFT KSAKGTPLPS 960 LGKSDAADTS NDSPLGGSSA NHEVAPGDSE NTQIDESNQV EPWVRALAEG DYYDLSVEER 1020 LNALVALVGV ATEGNSIRGV LEERLELANA LKKQMWAEAQ LDKRRSKEEF ASRVQYNSDM 1080 GLKADIYQEN NATEISSTPA CDVYKENDGH VGTINSCEMD DQHNQGNFGS MAYERNGIGQ 1140 EILATPDTSY VQQYAYADKT RSQLKSYIGH RAEQLYVYRS LPLGQDRRRN RYWQFTTSAS 1200 PNDLGSGRIF FESKDGCWRV IDSEEAFDSL VAALDTRGSR EAQLHSMLQV IEPTFKEAIK 1260 RRSAGIELPA GRYPKNGATD MIRANYHSEV GSSSSTPFGV TSDIVTAYAD SFKVELGRND 1320 FEKTAISKRA DKFLKWMWRE CYNQELTCAM KYGKKRCSEL LHSCNCCYQI YLAEERHCPS 1380 CHKTFKSIYN FSDHTTQCEE KRRTDPYWKM QITDYSVPIG MVLLKLQLVM IEAAIPSEAL 1440 QPFWTDVYRK SWSVKLYTTK SIAETFQLLT VLEGAIRPGC LSSDFETTSE CLNSQSIAPQ 1500 NPVLPAGSAS ALPWVPDTTS AVMLRMLDLD SAISYVQNQK MERDDGGFMK FPSRYTVAKS 1560 KQEGILEPTG LNLYDGRWLP GSGRRGRGRG SRGGSRGGRG RSRGGRIPRG VSSSSRIEFK 1620 DEIVASDKAP RKNARRGRAR GRGSRRGRRT VRPRQPSAGR ARSIPKENLL GSFSMLSSSK 1680 PAPVEESPQS SGADEWGLET RVTYNECDEN SSGSESEDNE ENGQPMDEDY EEQVLDYSMG 1740 YSSGSRHHGT MSMMDHETEE EDEDAEGDEN VEEDDADQAV DDADVEMDED DETGDDGEDG 1800 NVGGEMNADE DPDATSYSSD YSE*

Sequence ? help Back to Top

Protein Sequence Length: 1824 aa Download sequence Send to blast

MDAGGDGDGD GAGKAALEAP AEATTPPPAP VAAPAPVSAS TAAAGAGTSG SGEKPVKRMM  60
KTPYQLEVLE KTYAAEQYPS EAMRLELSAK IGLSDRQLQM WFCHRRLKDR KPPAKRQRRE  120
EESALAPVMP PPPVLPAPVS VMPLASSDHM VGAPGPYDEP LHPVHSRRGA GRSSAVPRIS  180
MPDIGRRYYE PTPIMIAPAI PSMQLTQSEL RVINSVESEL GEPLREDGPA LGIEFDPLPP  240
GAFGAPIVPE QQKQPVRSYN TKMFSRHDQK LLKASAFLPT MESPSVPNSF TGKRKSTVGN  300
SPIVQPHVGS RAVHEYQFLP EQPSDTYERA SRSHYYDTPV EVSNSRISSL TSGSQLLHGS  360
EVAAPSYAFQ GHTSGSSLMP QSSRSQVAAF ENPLISYERR AYHDEDTSRV ERKRKHNEEA  420
KIAKEVEAHE RRIRKELEKQ DILNRKREEQ RRKEMERLDR ERRKEEERLL RERQREEERF  480
QREQRREHER MEKLLQKQSR RAEKQRQKEE LRKEKEAARQ KAANERATAR RIAREYMELV  540
EDERLELMEL AAQNKGLPSM LHLDSDTLQQ LDSFRGMLRQ FPPATVRLKL PFSIKPWTGS  600
EDNVGKLLMV WKFFITFTDV LGLCPVTLDE FVQSLHDYDS RLLGELHVAL LKSIIKDIED  660
VARTQSIALG VNPGGHPQIV EGAYAWGFNI RSWQRHLNLL TWPEILRQFA LSAGFGPQLK  720
KRTVEDSYYR NDNEGHDGEN VISTLRNGSA AVNAAAKMKE RGYTNRRRSR HRLTPGTVKF  780
AAFHVLSLEG SKGLTILEVA EKIQKSGLRD LTTSKTPEAS IAAALSRDTK LFERTAPSTY  840
CVKSPYRKDP ADSEAVLSAA REKIRAFQNV LSDSEAEKEA DEAERDDDSE CDDADDDPDG  900
DDVNTEVEDD KDPPLAVKAQ DEVPSTTTVI GIRSELDSVG NALNSSSSFT KSAKGTPLPS  960
LGKSDAADTS NDSPLGGSSA NHEVAPGDSE NTQIDESNQV EPWVRALAEG DYYDLSVEER  1020
LNALVALVGV ATEGNSIRGV LEERLELANA LKKQMWAEAQ LDKRRSKEEF ASRVQYNSDM  1080
GLKADIYQEN NATEISSTPA CDVYKENDGH VGTINSCEMD DQHNQGNFGS MAYERNGIGQ  1140
EILATPDTSY VQQYAYADKT RSQLKSYIGH RAEQLYVYRS LPLGQDRRRN RYWQFTTSAS  1200
PNDLGSGRIF FESKDGCWRV IDSEEAFDSL VAALDTRGSR EAQLHSMLQV IEPTFKEAIK  1260
RRSAGIELPA GRYPKNGATD MIRANYHSEV GSSSSTPFGV TSDIVTAYAD SFKVELGRND  1320
FEKTAISKRA DKFLKWMWRE CYNQELTCAM KYGKKRCSEL LHSCNCCYQI YLAEERHCPS  1380
CHKTFKSIYN FSDHTTQCEE KRRTDPYWKM QITDYSVPIG MVLLKLQLVM IEAAIPSEAL  1440
QPFWTDVYRK SWSVKLYTTK SIAETFQLLT VLEGAIRPGC LSSDFETTSE CLNSQSIAPQ  1500
NPVLPAGSAS ALPWVPDTTS AVMLRMLDLD SAISYVQNQK MERDDGGFMK FPSRYTVAKS  1560
KQEGILEPTG LNLYDGRWLP GSGRRGRGRG SRGGSRGGRG RSRGGRIPRG VSSSSRIEFK  1620
DEIVASDKAP RKNARRGRAR GRGSRRGRRT VRPRQPSAGR ARSIPKENLL GSFSMLSSSK  1680
PAPVEESPQS SGADEWGLET RVTYNECDEN SSGSESEDNE ENGQPMDEDY EEQVLDYSMG  1740
YSSGSRHHGT MSMMDHETEE EDEDAEGDEN VEEDDADQAV DDADVEMDED DETGDDGEDG  1800
NVGGEMNADE DPDATSYSSD YSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G252200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021312476.1	0.0	homeobox-DDT domain protein RLT2 isoform X2
TrEMBL	A0A1B6Q589	0.0	A0A1B6Q589_SORBI; Uncharacterized protein
STRING	Sb03g030770.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sobic.003G252200.2.p
Entrez Gene	8080833