PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G252100.1.p

Common Name

Sb03g030770, SORBIDRAFT_03g030770

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

HB-other

Protein Properties

Length: 1843aa MW: 205292 Da PI: 5.2626

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G252100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3e-18	57	111	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ ++yps+++r eL++k+gL++rq ++WF+ rR k++k Sobic.003G252100.1.p 57 KRMMKTPYQLEVLEKTYAAEQYPSEAMRLELSAKIGLSDRQLQMWFCHRRLKDRK 111 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.84E-17	39	111	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-17	42	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.034	52	112	IPR001356	Homeobox domain
SMART	SM00389	3.6E-17	54	116	IPR001356	Homeobox domain
CDD	cd00086	2.38E-14	57	112	No hit	No description
Pfam	PF00046	4.5E-16	57	111	IPR001356	Homeobox domain
SMART	SM00571	1.4E-18	632	691	IPR018501	DDT domain
PROSITE profile	PS50827	15.468	632	691	IPR018501	DDT domain
Pfam	PF02791	4.5E-16	634	688	IPR018501	DDT domain
Pfam	PF05066	1.4E-15	807	875	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.4E-9	1031	1073	IPR028942	WHIM1 domain
Pfam	PF15613	9.5E-13	1198	1268	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1843 aa Download sequence Send to blast
MDAGGDGDGD GAGKATQEAP AEATTPPPAP VAAPVPVSAS ATGAGAGTSG SGEKPVKRMM 60 KTPYQLEVLE KTYAAEQYPS EAMRLELSAK IGLSDRQLQM WFCHRRLKDR KPPTKRQRRE 120 EESALAPVMP PPPVLPAPVS VMPLASSDLM VGAPGPYDEP LHPVHSRRGA GRSSAVPRIS 180 MPDIGRRYYE PTPIMIAPAI PSMQLTQSEL RVINSVESQL GEPLREDGPA LGVEFDPLPP 240 GAFGAPIVPE QQKQPVRSYD TKIFSRHDQK LLKASAFLPT MESPFVPNSF TGKRKSTVGN 300 TPIVQPHVGS RAVHEYQFLP EQPSDTYERA SRSHYYDTPV EVSNSRISSL TSGSQLLHGS 360 EAAAPSYAFQ GHTSGSSLMP QPSRSQVFPG APADYETTQS NSNLNSVPVE GQFDISQVAA 420 FENPLVSSER RAYHDEDTSR VERKRKHNEE AKIAKEVEAH ERRIRKELEK QDILNRKREE 480 QRRKEMERLD RERRKEEERL LRERQREEER FQREQRREHE RMEKLLQKQS RRAEKQRQKE 540 ELRKEKEAAR QKAANERATA RRIAREYMEL VEDERLELME LAAQNKGLPS MLHLDSDTLQ 600 QLDSFRGMLS QFPPTTVRLK LPFSIKPWTG SEDNVGKLLM VWKFFITFTD VLGLCPVTLD 660 EFVQSLHDYD SRLLGELHVA LLKSIIKDIE DVARTQSIAL GVNPGGHPQI VEGAYAWGFN 720 IRSWQRHLNL LTWPEILRQF ALSAGFGPQL KKRTVEDSYY RNDNEGHDGE NVISTLRNGS 780 AAVNAAAKMK ERGYTNRRRS RHRLTPGTVK FAAFHVLSLE GSKGLTILEV AEKIQKSGLR 840 DLTTSKTPEA SIAAALSRDA KLFERTAPST YCVKSPYRKD PADSEAVLSA AREKIRAFQN 900 VLSDSEAEKE ADEAERDDDS ECDDADDDPD GDDVNTEVED DKDPPLAVKA QDEVPSTTTV 960 IGIRSELDSV GNALNSSSSF TKSAKGTPLP SLGKSDAADT SNDSPLGGSS ANHEVAPGDS 1020 ENTQIDESNQ VEPWVRALAE GDYCDLSVEE RLNALVALVG VATEGNSIRG VLEERLELAN 1080 ALKKQMWAEA QLDKRRSKEE FASRVQYNSD MGLKADLYQE NNATENDGHV GTMNSCEMLD 1140 QHNQGNFGSM AYERNGIGQE ILATPDTSYV QQYAYADKTR SQLKSYIGHR AEQLYVYRSL 1200 PLGQDRRRNR YWQFTTSASP NDPGSGRIFF ESKDGCWRVI DSEEAFDSLV AALDTRGSRE 1260 AQLHSMLQVI EPTFKEAIKR RSASIELPAG RYPKNGATDM IRANYHSEVG SSSSTPFGAT 1320 SDIVTAYSDS FKVELGRNDF EKTAISKRAD KFLKWMWREC YNQELTCAMK YGKKRCSELL 1380 HSCNCCYQIY LAEERHCPSC HKTFKSIYNF SDHTTQCEEK RRTDPYWKMQ IADYSVPIGM 1440 VLLKLQLVTI EACIPSEALQ PFWTDVYRKS WSVKLYTTKS IAETFQLLTV LEGAIRPGCL 1500 SSDFETTSEC LNSQGIAPHN PVLPAGSASA LPWVPDTTSA VMLRMLDLDS AISYVQNQKM 1560 ERDDGGFMKF PSRYTVAKSK QEGILEPTGL NLYDGRWLPG SGRRGRGRGS RGGSRGGRGR 1620 SRGGRIPRGV SSSSRIEFKD DIVASDKAPR KNARRGRARG RGSRRGRRTV RPRQPSAGRA 1680 RSIPKENLLG SFSMLSSSKP APVEESPQSS GADEWGLETR VTYNECDENS SGSESEDNEE 1740 NGQPMDEDYE EHVPDYSVGY SSRSRHHGTM SMMDHETDEE DDDAEGDENV EEDDADQAVD 1800 DADVEMDEDD EIGDDGEDGN LGGEMNADED PDATSYSSDY SE*

Sequence ? help Back to Top

Protein Sequence Length: 1843 aa Download sequence Send to blast

MDAGGDGDGD GAGKATQEAP AEATTPPPAP VAAPVPVSAS ATGAGAGTSG SGEKPVKRMM  60
KTPYQLEVLE KTYAAEQYPS EAMRLELSAK IGLSDRQLQM WFCHRRLKDR KPPTKRQRRE  120
EESALAPVMP PPPVLPAPVS VMPLASSDLM VGAPGPYDEP LHPVHSRRGA GRSSAVPRIS  180
MPDIGRRYYE PTPIMIAPAI PSMQLTQSEL RVINSVESQL GEPLREDGPA LGVEFDPLPP  240
GAFGAPIVPE QQKQPVRSYD TKIFSRHDQK LLKASAFLPT MESPFVPNSF TGKRKSTVGN  300
TPIVQPHVGS RAVHEYQFLP EQPSDTYERA SRSHYYDTPV EVSNSRISSL TSGSQLLHGS  360
EAAAPSYAFQ GHTSGSSLMP QPSRSQVFPG APADYETTQS NSNLNSVPVE GQFDISQVAA  420
FENPLVSSER RAYHDEDTSR VERKRKHNEE AKIAKEVEAH ERRIRKELEK QDILNRKREE  480
QRRKEMERLD RERRKEEERL LRERQREEER FQREQRREHE RMEKLLQKQS RRAEKQRQKE  540
ELRKEKEAAR QKAANERATA RRIAREYMEL VEDERLELME LAAQNKGLPS MLHLDSDTLQ  600
QLDSFRGMLS QFPPTTVRLK LPFSIKPWTG SEDNVGKLLM VWKFFITFTD VLGLCPVTLD  660
EFVQSLHDYD SRLLGELHVA LLKSIIKDIE DVARTQSIAL GVNPGGHPQI VEGAYAWGFN  720
IRSWQRHLNL LTWPEILRQF ALSAGFGPQL KKRTVEDSYY RNDNEGHDGE NVISTLRNGS  780
AAVNAAAKMK ERGYTNRRRS RHRLTPGTVK FAAFHVLSLE GSKGLTILEV AEKIQKSGLR  840
DLTTSKTPEA SIAAALSRDA KLFERTAPST YCVKSPYRKD PADSEAVLSA AREKIRAFQN  900
VLSDSEAEKE ADEAERDDDS ECDDADDDPD GDDVNTEVED DKDPPLAVKA QDEVPSTTTV  960
IGIRSELDSV GNALNSSSSF TKSAKGTPLP SLGKSDAADT SNDSPLGGSS ANHEVAPGDS  1020
ENTQIDESNQ VEPWVRALAE GDYCDLSVEE RLNALVALVG VATEGNSIRG VLEERLELAN  1080
ALKKQMWAEA QLDKRRSKEE FASRVQYNSD MGLKADLYQE NNATENDGHV GTMNSCEMLD  1140
QHNQGNFGSM AYERNGIGQE ILATPDTSYV QQYAYADKTR SQLKSYIGHR AEQLYVYRSL  1200
PLGQDRRRNR YWQFTTSASP NDPGSGRIFF ESKDGCWRVI DSEEAFDSLV AALDTRGSRE  1260
AQLHSMLQVI EPTFKEAIKR RSASIELPAG RYPKNGATDM IRANYHSEVG SSSSTPFGAT  1320
SDIVTAYSDS FKVELGRNDF EKTAISKRAD KFLKWMWREC YNQELTCAMK YGKKRCSELL  1380
HSCNCCYQIY LAEERHCPSC HKTFKSIYNF SDHTTQCEEK RRTDPYWKMQ IADYSVPIGM  1440
VLLKLQLVTI EACIPSEALQ PFWTDVYRKS WSVKLYTTKS IAETFQLLTV LEGAIRPGCL  1500
SSDFETTSEC LNSQGIAPHN PVLPAGSASA LPWVPDTTSA VMLRMLDLDS AISYVQNQKM  1560
ERDDGGFMKF PSRYTVAKSK QEGILEPTGL NLYDGRWLPG SGRRGRGRGS RGGSRGGRGR  1620
SRGGRIPRGV SSSSRIEFKD DIVASDKAPR KNARRGRARG RGSRRGRRTV RPRQPSAGRA  1680
RSIPKENLLG SFSMLSSSKP APVEESPQSS GADEWGLETR VTYNECDENS SGSESEDNEE  1740
NGQPMDEDYE EHVPDYSVGY SSRSRHHGTM SMMDHETDEE DDDAEGDENV EEDDADQAVD  1800
DADVEMDEDD EIGDDGEDGN LGGEMNADED PDATSYSSDY SE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G252100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021313030.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A1B6Q591	0.0	A0A1B6Q591_SORBI; Uncharacterized protein
STRING	Sb03g030770.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sobic.003G252100.1.p
Entrez Gene	8080833