PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G251800.1.p
Common NameSb03g030750, SORBIDRAFT_03g030750
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 330aa    MW: 36106.3 Da    PI: 8.4853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G251800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.47.4e-33662061128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 
                           lp+G++F+Ptd+el+ e+L+ k++ +       ++++   i+   +i++++P++Lp  v ++    +fF++ +k+y+tg+rk+r+++  
  Sobic.003G251800.1.p  66 LPAGVKFDPTDQELL-EHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtd 152
                           799************.99****998885665443333333665557**********.555555677******************74445 PP

                   NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Sobic.003G251800.1.p 153 eqggETRWHKTGKTRPVFT-NGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 206
                           6555778************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-3758225IPR003441NAC domain
PROSITE profilePS5100533.26266225IPR003441NAC domain
PfamPF023654.5E-1567206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QASSHVNLIR TCPSCGHRAQ YEQVQAAATI  60
QDLPGLPAGV KFDPTDQELL EHLEGKARPD ARKLHPLIDE FIPTIEGENG ICYTHPERLP  120
GVGKDGLIRH FFHRPSKAYT TGTRKRRKVH TDEQGGETRW HKTGKTRPVF TNGKLKGYKK  180
ILVLYTNYGK QRKPEKTNWV MHQYHLGSDE EEKDGELVVS KVFYQTQPRQ CGSGSATAKD  240
VVPLAAGLAT TDHHHHHHHH HHDDDDGGNG GSNNSMLKEA GIVDFYSPAA LIGYNQAVAP  300
TNRAAAAASA HLMPNFEVHT TAGTAGFGP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.91421e-125root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G251800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0549450.0BT054945.1 Zea mays full-length cDNA clone ZM_BFc0091A12 mRNA, complete cds.
GenBankBT0629760.0BT062976.1 Zea mays full-length cDNA clone ZM_BFc0013H24 mRNA, complete cds.
GenBankJX4285340.0JX428534.1 Zea mays subsp. mays clone pUT3134 NAC82 NAC type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311090.10.0NAC domain-containing protein 73
SwissprotO494591e-124NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1B6Q5750.0A0A1B6Q575_SORBI; Uncharacterized protein
STRINGSb03g030750.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-124NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]