PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G250100.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WOX
Protein Properties Length: 534aa    MW: 54514.6 Da    PI: 8.2276
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G250100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.22.2e-1668128257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           ++R+++ +eq+++Le+ F++   +p ++e+ ++ ++l    ++ +++V++WFqNr+a+ k+
  Sobic.003G250100.2.p  68 KPRWNPRPEQIRILEAIFNSgMINPPRDEIPRIRMRLqeygQVGDANVFYWFQNRKARSKN 128
                           89*****************99*************************************995 PP
2Wus_type_Homeobox109.42.1e-3567129264
     Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                           +++RW+P+peQi+iLe++++sG+ +P+++ei ri+++L+eyG+++d+NVfyWFQNrkaR+++k
  Sobic.003G250100.2.p  67 PKPRWNPRPEQIRILEAIFNSGMINPPRDEIPRIRMRLQEYGQVGDANVFYWFQNRKARSKNK 129
                           579**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.36E-1161131IPR009057Homeodomain-like
PROSITE profilePS5007110.10664129IPR001356Homeobox domain
SMARTSM003891.3E-666133IPR001356Homeobox domain
CDDcd000861.05E-667129No hitNo description
PfamPF000464.7E-1468127IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-668128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MASSFNNSHW PSMFRSKHAA EPWQTQPDIS SSPPSLLSAA GGSTTIGRCL RHPLSGYSGG  60
EERTPDPKPR WNPRPEQIRI LEAIFNSGMI NPPRDEIPRI RMRLQEYGQV GDANVFYWFQ  120
NRKARSKNKL RTTTAGAGRL GLGLARAPGR GAAAAAPVTP PPPPPQQQQQ SLIQNQFQLL  180
ASPAQAPASS SSSSSDRSSG SSKPAAKPAA AQAMSSATAA AMDLLGPLAA ACPHQMYYQG  240
RHPVAPVSAP AHKVLDDLDP VLQQLPQGYC LSAAEVAAIL GAGGQYMHVP VQQQPPAAFS  300
AGAFLGLCNE VTEPTVVTGH RTCAGLGQFW LGGGADHHQL IGKNNTTAAT NTVVREVAHE  360
DATKLGLLQY GFGASTAMEA APLAASPAGA AVTVACVAAT TAGLTGLPPA STNGVVANYD  420
LLQGLAGVPG AGAVGVVSTG AGAPAAVAVA APASAAAAQE GVVALCITDT VTGKSVAHNV  480
AAARLDVRAH FGEAAVLLRG VGERGLGLEP VPIDASGCTV EPLQHGAFYY VLV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G250100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557941e-166BT055794.1 Zea mays full-length cDNA clone ZM_BFb0196O06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313579.10.0WUSCHEL-related homeobox 7
SwissprotQ0JKK61e-107WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBLA0A1W0VYT40.0A0A1W0VYT4_SORBI; Uncharacterized protein
STRINGGRMZM2G133972_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Representative plantOGRP1290845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-41homeobox-3