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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G244100.3.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 367aa MW: 38998.5 Da PI: 9.2685 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G244100.3.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 69.9 | 4e-22 | 222 | 284 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
+ke+krerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN++L++e+++l++ ++kl++e+
Sobic.003G244100.3.p 222 DKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRNEISKLTDSSQKLRMEN 284
689*********************************************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MGHDEAVVTQ NSVKAPSPPK DQPAIYPCLD WSTMQAYYGQ GVLPPAFFNP GIAPGHVPPP 60 YVWCPQNMPP AAFGKPYAAI YPHAGGFLHP FMPLMVNPLS AEPAKSANSK DNSLNKKLKE 120 IDGTAVSSGN SEKTSGDYSL EGSSDGNNPK VSGTPKKRSF DDRTTSETCG VSATNDKPGE 180 SGRLATLPNV HIPDATMKPS VSTGSDFKVS GATSTEWPAK DDKESKRERR KQSNRESARR 240 SRLRKQAETE ELARKVELLT AENTSLRNEI SKLTDSSQKL RMENAALMEK LAGGTSDQAQ 300 EASAGHQTTA TAPPPSARVV KNFLSMMDVE GPSRGGGSRR TEHGAPRLRQ LLSSGGPLAA 360 DAVAAS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 238 | 244 | RRSRLRK |
2 | 238 | 245 | RRSRLRKQ |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT063685 | 0.0 | BT063685.1 Zea mays full-length cDNA clone ZM_BFc0095E05 mRNA, complete cds. |
GenBank | JX469956 | 0.0 | JX469956.1 Zea mays subsp. mays clone UT3218 bZIP-type transcription factor mRNA, partial cds. |