PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G243500.1.p
Common NameSb03g029990, SORBIDRAFT_03g029990
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 328aa    MW: 34026.5 Da    PI: 4.2794
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G243500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.4e-20102152155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ ++ a+ +l+g
  Sobic.003G243500.1.p 102 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDTAAIQLRG 152
                           69********.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-12102152IPR001471AP2/ERF domain
CDDcd000182.14E-29102159No hitNo description
SMARTSM003802.6E-33103166IPR001471AP2/ERF domain
PROSITE profilePS5103223.341103160IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21103160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-29103160IPR001471AP2/ERF domain
PRINTSPR003672.8E-10104115IPR001471AP2/ERF domain
PRINTSPR003672.8E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSRARTVRIF WDDPDLTDSS GEEDGCGARR VGRMVRELPP MAAPAAAAAA APAAAAVPDQ  60
CNAGDGDRGR RVGVGVAGPV GVCSGARRRL GKGGGPGGAA STKFRGVRRR PWGKFAAEIR  120
DPWRGVRVWL GTFDTAEEAA RVYDTAAIQL RGPNATTNFS SAGSGAAGQL QDPATPGGYE  180
SGAESSPAVS SPTSVLRKVP SVSSLAEDSS KDFDSDVAAA PCEPAVTECR SLAVLEEEEL  240
GEFVPFEDAP VYATSGFWDF EPDAGFLYAE PSSPELSWNA AAAAGAEPAS SDDAPSWAAP  300
ASPMQENNDY FQDLRDLFPL NPLPAIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2190166181Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G243500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341101e-130BT034110.1 Zea mays full-length cDNA clone ZM_BFc0028O19 mRNA, complete cds.
GenBankBT0343371e-130BT034337.1 Zea mays full-length cDNA clone ZM_BFc0009P04 mRNA, complete cds.
GenBankBT0552411e-130BT055241.2 Zea mays full-length cDNA clone ZM_BFc0029G06 mRNA, complete cds.
GenBankEU9575181e-130EU957518.1 Zea mays clone 1596096 ap2 domain protein mRNA, complete cds.
GenBankKJ7275871e-130KJ727587.1 Zea mays clone pUT5447 AP2-EREBP transcription factor (EREB208) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458254.10.0ethylene-responsive transcription factor CRF1
TrEMBLC5XFB40.0C5XFB4_SORBI; Uncharacterized protein
STRINGSb03g029990.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-26cytokinin response factor 1