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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G226800.1.p | ||||||||
Common Name | Sb03g028470, SORBIDRAFT_03g028470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | HSF | ||||||||
Protein Properties | Length: 366aa MW: 39232.3 Da PI: 6.5041 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.8 | 1.4e-32 | 33 | 125 | 1 | 102 |
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 aF+ k+y+++ d++++ l++w +++nsfvv+d f++ +Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+h+sF +g Sobic.003G226800.1.p 33 AFVAKTYQMVCDPRTDALVRWGRDNNSFVVVDAAGFSRLLLPCFFKHSNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRG 112 69****************************************************************999.........*********** PP XXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkks 102 +++ll +i r+k+ Sobic.003G226800.1.p 113 QTHLLPRIVRRKK 125 **********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.7E-50 | 30 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.9E-35 | 31 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.77E-32 | 32 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.8E-16 | 34 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 8.2E-29 | 34 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-16 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 73 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-16 | 85 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MMDGLHTELA LGLLAGCGVG GGGGGDQLLQ TAAFVAKTYQ MVCDPRTDAL VRWGRDNNSF 60 VVVDAAGFSR LLLPCFFKHS NFSSFVRQLN TYGFRKVHPD RWEFAHESFL RGQTHLLPRI 120 VRRKKRGEGG GGACSASGGD AQAQSHYAAA AGCCTGTGED HHHHHQEEEE ADPDNEKEAA 180 LLEEVQRLRQ EQTAIGEELA QMSRRLQATE RRPDQLMSFL ARLAEDPDGV TRSLVEQAAE 240 KKRCRMQLAS QPVRPLPPPL PPAPPPVPVP VPALHHHPLL AALGGGAAKG LDGWQWEWAE 300 QKPSAVVLPT FDPPAATYCG VGVHHVPNLG GGNGGGIIGM GLTAADETAV ETTPFPFCLL 360 GQGFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 2e-23 | 33 | 123 | 9 | 110 | Heat shock factor protein 1 |
5hdn_A | 2e-23 | 33 | 123 | 9 | 110 | Heat shock factor protein 1 |
5hdn_B | 2e-23 | 33 | 123 | 9 | 110 | Heat shock factor protein 1 |
5hdn_C | 2e-23 | 33 | 123 | 9 | 110 | Heat shock factor protein 1 |
5hdn_D | 2e-23 | 33 | 123 | 9 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G226800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069479 | 1e-128 | AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455983.1 | 0.0 | heat stress transcription factor C-1a | ||||
Swissprot | Q6VBA4 | 1e-123 | HFC1A_ORYSJ; Heat stress transcription factor C-1a | ||||
TrEMBL | C5XEC7 | 0.0 | C5XEC7_SORBI; Uncharacterized protein | ||||
STRING | Sb03g028470.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 | Representative plant | OGRP12902 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 4e-41 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G226800.1.p |
Entrez Gene | 8084856 |
Publications ? help Back to Top | |||
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