PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G220700.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 339aa    MW: 36800.1 Da    PI: 8.3409
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G220700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-062146127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                          ++++ C+ ++ +G Ck+ ++CkF+H++
  Sobic.003G220700.3.p 21 PGEPDCP-YLLSGRCKFKSKCKFNHPK 46
                          57899**.9999*************96 PP
2zf-CCCH34.63.1e-117498327
                          S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          ++ C+f+a+tG Ck+G+ CkF H++
  Sobic.003G220700.3.p 74 EPVCSFYAKTGKCKFGAICKFDHPK 98
                          789********************96 PP
3zf-CCCH40.83.7e-13153178126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ++++ C+f+++tG CkyG+ C+F+H+
  Sobic.003G220700.3.p 153 PGEVDCSFYMKTGSCKYGSVCRFNHP 178
                           57899********************9 PP
4zf-CCCH34.73e-11236258426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             C+f+++tG Cky  +CkF+H+
  Sobic.003G220700.3.p 236 IVCDFYMKTGSCKYSQKCKFHHP 258
                           57********************8 PP
5zf-CCCH34.14.5e-11287310427
                           ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           e C f++r+GtC++G  CkF H+p
  Sobic.003G220700.3.p 287 EACAFYMRSGTCRFGVHCKFDHPP 310
                           78********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00812046IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5542047IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8787199IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-57198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-57199IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-87498IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-47696IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929152180IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-7152179IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-10154178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5156179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5158177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873232260IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5232259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6234261IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9236258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-6237258IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-5283310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042283311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5285311IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-9287310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4287309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSARDDLRKV PNVEDSYPER PGEPDCPYLL SGRCKFKSKC KFNHPKKMVN ALATGTDNES  60
LIADSAILPV RPSEPVCSFY AKTGKCKFGA ICKFDHPKPK DIKTPPLIAK ETIYTATTDA  120
AANIGAADDS VPAKTRAPTA PASHNAKGLP IRPGEVDCSF YMKTGSCKYG SVCRFNHPDR  180
PAVDIAFVAP LLPCPASTVP GVVLNPAANF LQSFDFHASH VPVEPAPIYP QRPGEIVCDF  240
YMKTGSCKYS QKCKFHHPID RSAPHFNENG DPQPPVTLGF PRREDAEACA FYMRSGTCRF  300
GVHCKFDHPP RQKAISKLQA AGKEGIEGLS VALHDPDV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.58911e-166leaf| pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G220700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656560.0BT065656.1 Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312417.10.0zinc finger CCCH domain-containing protein 8-like isoform X2
SwissprotQ5ZDJ61e-128C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A1B6Q4P60.0A0A1B6Q4P6_SORBI; Uncharacterized protein
STRINGSb03g027910.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-81floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]