PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G220700.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 326aa    MW: 35312.7 Da    PI: 8.6766
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G220700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-116185327
                          S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          ++ C+f+a+tG Ck+G+ CkF H++
  Sobic.003G220700.2.p 61 EPVCSFYAKTGKCKFGAICKFDHPK 85
                          789********************96 PP
2zf-CCCH40.93.5e-13140165126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ++++ C+f+++tG CkyG+ C+F+H+
  Sobic.003G220700.2.p 140 PGEVDCSFYMKTGSCKYGSVCRFNHP 165
                           57899********************9 PP
3zf-CCCH34.82.8e-11223245426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             C+f+++tG Cky  +CkF+H+
  Sobic.003G220700.2.p 223 IVCDFYMKTGSCKYSQKCKFHHP 245
                           57********************8 PP
4zf-CCCH34.24.3e-11274297427
                           ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           e C f++r+GtC++G  CkF H+p
  Sobic.003G220700.2.p 274 EACAFYMRSGTCRFGVHCKFDHPP 297
                           78********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356111233IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.6151534IPR000571Zinc finger, CCCH-type
PfamPF146080.362032No hitNo description
SuperFamilySSF902292.35E-55886IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-55885IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8785886IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-86185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-46383IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-7139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929139167IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10141165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5143166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-5145164IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5219246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873219247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6221248IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9223245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-6224245IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-5270297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042270298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5272298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4274296IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-9274297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MLKILILSDQ GNQIYLLSGR CKFKSKCKFN HPKKMVNALA TGTDNESLIA DSAILPVRPS  60
EPVCSFYAKT GKCKFGAICK FDHPKPKDIK TPPLIAKETI YTATTDAAAN IGAADDSVPA  120
KTRAPTAPAS HNAKGLPIRP GEVDCSFYMK TGSCKYGSVC RFNHPDRPAV DIAFVAPLLP  180
CPASTVPGVV LNPAANFLQS FDFHASHVPV EPAPIYPQRP GEIVCDFYMK TGSCKYSQKC  240
KFHHPIDRSA PHFNENGDPQ PPVTLGFPRR EDAEACAFYM RSGTCRFGVH CKFDHPPRQK  300
AISKLQAAGK EGIEGLSVAL HDPDV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.58911e-147leaf| pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G220700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656560.0BT065656.1 Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312416.10.0zinc finger CCCH domain-containing protein 8-like isoform X1
RefseqXP_021312417.10.0zinc finger CCCH domain-containing protein 8-like isoform X2
SwissprotQ5ZDJ61e-119C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A1B6Q4P10.0A0A1B6Q4P1_SORBI; Uncharacterized protein
STRINGSb03g027910.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-72floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]