PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G202600.1.p
Common NameSb03g026470, SORBIDRAFT_03g026470
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 300aa    MW: 32401.2 Da    PI: 9.5421
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G202600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.6e-14556147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                          ++rWT+eE+  l+ +v+++G+g W+tI r          R+  ++k++w+++
  Sobic.003G202600.1.p  5 KQRWTPEEEAALKAGVAKHGPGKWRTILRDSDfsellRLRSNVDLKDKWRNL 56
                          79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.226161IPR017930Myb domain
SuperFamilySSF466894.74E-15259IPR009057Homeodomain-like
SMARTSM007175.9E-8459IPR001005SANT/Myb domain
PfamPF002491.2E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-14556IPR009057Homeodomain-like
CDDcd116601.05E-18656No hitNo description
SuperFamilySSF467855.99E-17122196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-17123195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.4E-13124187IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.807124192IPR005818Linker histone H1/H5, domain H15
PfamPF005385.1E-10129185IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAPKQRWTP EEEAALKAGV AKHGPGKWRT ILRDSDFSEL LRLRSNVDLK DKWRNLSVTA  60
GGYGSREKAR MALKKGKRVV PKLTAEPMDI DGKDMDNAHD AAIEAEPLAM ALEPLAIEES  120
PDKSVARLDD LIFEAIRKLN EPSGSNKAAI AAYIEEQYWP PADFQRLLST KLKSLVNSGK  180
LIKVNQKFRI AQSSPPLGGI STKVSSAEGM NTGKNNAKRL TKPQVVAELE KMKGMTKEEA  240
AAFAAKAVAE AEVAIAEAEE AARVAEAAEN DAEAAKAFLD AVTLSMRSRN AASMMLRAC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.96130.0callus| leaf| ovary| panicle| pollen
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G202600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2716590.0AY271659.1 Zea mays single myb histone 1 (Smh1) mRNA, complete cds.
GenBankBT0421770.0BT042177.1 Zea mays full-length cDNA clone ZM_BFb0153F14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455864.10.0single myb histone 1
SwissprotB4FT401e-163SMH2_MAIZE; Single myb histone 2
TrEMBLC5XPI10.0C5XPI1_SORBI; Uncharacterized protein
STRINGSb03g026470.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-63telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]