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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G199400.1.p |
Common Name | Sb03g026170, SORBIDRAFT_03g026170 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 217aa MW: 23757 Da PI: 5.8053 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G199400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 98.4 | 4.7e-31 | 137 | 195 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYG+K vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY g Hnh+
Sobic.003G199400.1.p 137 LDDGYRWRKYGKKLVKNSPNPRNYYRCSSEGCRVKKRVERERDDARFVITTYDGVHNHP 195
59********************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
GO:0050832 | Biological Process | defense response to fungus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MSSSYSSLLS PSRAHADDHR VLLGGDADDD DMAAVSSYLS LDDIVDDVVG GEWYRPLAEE 60 SSSAAAAELQ PEPLLFATLQ AEDGYCVSGS GGEQSSAALA NDNHDRIDLT QDGGSRRLLR 120 SEHGKIAFKT RSDVDVLDDG YRWRKYGKKL VKNSPNPRNY YRCSSEGCRV KKRVERERDD 180 ARFVITTYDG VHNHPAAAPP RSPAYRLGEP PHGHHV*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK108522 | 1e-84 | AK108522.1 Oryza sativa Japonica Group cDNA clone:002-144-B05, full insert sequence. |
GenBank | AY341846 | 1e-84 | AY341846.1 Oryza sativa (japonica cultivar-group) WRKY5 mRNA, complete cds. |
GenBank | CT831367 | 1e-84 | CT831367.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI006O16, full insert sequence. |