PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G191800.4.p | ||||||||
Common Name | Sb03g025570, SORBIDRAFT_03g025570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 357aa MW: 36418.5 Da PI: 9.1097 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.6 | 6.8e-06 | 239 | 281 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 er rrR ri +++ L++l+P a K++ a++L +A +Y++ L Sobic.003G191800.4.p 239 ERPRRRNVRISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 281 678999999*************966......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.198 | 232 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-7 | 238 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.96E-9 | 239 | 286 | No hit | No description |
SuperFamily | SSF47459 | 4.32E-11 | 240 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-9 | 242 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MAMATPTPAY ADVDADVLQR QQHHHRHHGA MGISMPPDYD LTPATTPAVA VTAAAFTATA 60 AVDSGGNNSL VVGRSPPPVF SASCNETTAT AAAVTATTSL SCEQGGGGGG AGGGKRQRRP 120 NRKRKAAAER SPVAVAAAAA QESTLCSLLA SGTTTAGEGG IQIAFSTSAA KRSAKPSSLS 180 SSGSSSISFD GRNNPAGNGG GVEDSMYEPD TEALAQVKEM IYRAAAMRPV SLGSEDAGER 240 PRRRNVRISE RLRVLQKLVP GGAKMDTASM LDEAANYLRF LKSQVRELQT LDRRNYGATA 300 NNANDATAAM AAVGSSSSLM SYNNGNGAMP FSFPAAGETL RGSVGGGLDR PADLVI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G191800.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458018.1 | 0.0 | putative lysozyme-like protein | ||||
Refseq | XP_021311497.1 | 0.0 | putative lysozyme-like protein | ||||
TrEMBL | A0A1W0VY09 | 0.0 | A0A1W0VY09_SORBI; Uncharacterized protein | ||||
STRING | Sb03g025570.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 4e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G191800.4.p |
Entrez Gene | 8078191 |