PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G183000.1.p

Common Name

Sb03g024260, SORBIDRAFT_03g024260

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 154aa MW: 16743 Da PI: 9.6319

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G183000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.5e-11	42	100	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +rk++NR++A+rsR+RK+ +++ L+ v++L a N a+ + +a++++e+ Sobic.003G183000.1.p 42 RKRKRKESNRLSAQRSRARKQRQLDDLTAQVAALRARNGAMDAAARDAARRCAAVQAEN 100 6789*************************************999998888888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-9	38	102	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	40	103	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.9E-7	40	82	No hit	No description
Pfam	PF00170	6.9E-8	42	84	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-7	42	84	No hit	No description
CDD	cd14702	7.48E-11	43	80	No hit	No description
PROSITE pattern	PS00036	0	45	60	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MMASPGMVSM STVTTSPTTP STGSEGRQPE PDPLQAAATA ERKRKRKESN RLSAQRSRAR 60 KQRQLDDLTA QVAALRARNG AMDAAARDAA RRCAAVQAEN ALLHARTMEL SARLQSLTDL 120 IECMEAGASS MYQQPLQQQL LPLVDTTLYN YYC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	46	RKRKRK
2	41	47	RKRKRKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G183000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU942576	1e-119	EU942576.1 Zea mays clone 1520176 mRNA sequence.
GenBank	EU973298	1e-119	EU973298.1 Zea mays clone 396372 common plant regulatory factor 7 mRNA, complete cds.
GenBank	KJ728383	1e-119	KJ728383.1 Zea mays clone pUT6666 bZIP transcription factor (bZIP21) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310814.1	1e-106	bZIP transcription factor 44
TrEMBL	C5XMW6	1e-105	C5XMW6_SORBI; Uncharacterized protein
STRING	Sb03g024260.1	1e-106	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13757	24	28
Representative plant	OGRP16008	3	3

Link Out ? help Back to Top
Phytozome	Sobic.003G183000.1.p
Entrez Gene	8075454