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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G183000.1.p |
Common Name | Sb03g024260, SORBIDRAFT_03g024260 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 154aa MW: 16743 Da PI: 9.6319 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G183000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 33.4 | 9.5e-11 | 42 | 100 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
++ +rk++NR++A+rsR+RK+ +++ L+ v++L a N a+ + +a++++e+
Sobic.003G183000.1.p 42 RKRKRKESNRLSAQRSRARKQRQLDDLTAQVAALRARNGAMDAAARDAARRCAAVQAEN 100
6789*************************************999998888888887776 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 154 aa
Download sequence Send
to blast |
MMASPGMVSM STVTTSPTTP STGSEGRQPE PDPLQAAATA ERKRKRKESN RLSAQRSRAR 60 KQRQLDDLTA QVAALRARNG AMDAAARDAA RRCAAVQAEN ALLHARTMEL SARLQSLTDL 120 IECMEAGASS MYQQPLQQQL LPLVDTTLYN YYC*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 41 | 46 | RKRKRK |
2 | 41 | 47 | RKRKRKE |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU942576 | 1e-119 | EU942576.1 Zea mays clone 1520176 mRNA sequence. |
GenBank | EU973298 | 1e-119 | EU973298.1 Zea mays clone 396372 common plant regulatory factor 7 mRNA, complete cds. |
GenBank | KJ728383 | 1e-119 | KJ728383.1 Zea mays clone pUT6666 bZIP transcription factor (bZIP21) gene, partial cds. |