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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sobic.003G144200.1.p |
| Common Name | Sb03g012480, SORBIDRAFT_03g012480 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
TALE |
| Protein Properties |
Length: 295aa MW: 32458.5 Da PI: 5.681 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.003G144200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 28.7 | 2.2e-09 | 228 | 261 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55
+yp++e++ +LA+ +gL+ +q+ +WF N+R ++
Sobic.003G144200.1.p 228 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 261
69*****************************885 PP
|
| 2 | ELK | 33.2 | 1.1e-11 | 181 | 202 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK++Ll+KYsg+L+ L++EF+
Sobic.003G144200.1.p 181 ELKEMLLKKYSGCLSRLRSEFL 202
9********************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MEDLYSIHPG ISRVGGAASE ASVAGVGGPS PSDLTELMKA QIASHPRYPS LLSAYIECRK 60
VGAPPQVASL LEEVSRDRER RPGAGAGEIG VDPELDEFMD SYCRVLVRYK EELSRPFDEA 120
ASFLSSIQAQ LSNLCSAGSS PAATATHSDD MMGSSEDEQC SGDTDVPDIG QEHSSRLADH 180
ELKEMLLKKY SGCLSRLRSE FLKKRKKGKL PKDARTVLLE WWNTHYRWPY PTEEDKVRLA 240
AMTGLDPKQI NNWFINQRKR HWKPSEDMRF ALMEGVAGGS SGTTLYFDTG TIGP*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 196 | 205 | LRSEFLKKRK |
| 2 | 202 | 206 | KKRKK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY781901 | 0.0 | AY781901.1 Saccharum hybrid cultivar Pindar isolate c53a homeobox protein mRNA, complete cds. |
