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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.003G129000.1.p |
| Common Name | Sb03g010970, SORBIDRAFT_03g010970 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
MYB |
| Protein Properties |
Length: 283aa MW: 30154.6 Da PI: 10.2875 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.003G129000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.6 | 5e-17 | 42 | 87 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l+d+v+q+G+ +W++Ia+++ gR++k+c++rw++
Sobic.003G129000.1.p 42 RGHWRPAEDAKLKDLVAQYGPQNWNLIANKLH-GRSGKSCRLRWFNQ 87
899*****************************.***********996 PP
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| 2 | Myb_DNA-binding | 58.2 | 1.9e-18 | 94 | 138 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ +
Sobic.003G129000.1.p 94 RRPFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 138
679*******************.*********.***********987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MAHEMACFLG PAPPVPALSP FHEGQAESHG HGHGSSRSGH SRGHWRPAED AKLKDLVAQY 60
GPQNWNLIAN KLHGRSGKSC RLRWFNQLDP RLNRRPFSEE EEERLLAAHR AYGNKWALIA 120
RLFPGRTDNA VKNHWHVLMA RKQREHLSGS GGGAPRRRKP SSSSSASSSS SSSAVDVVVR 180
HQHASSPLPF REAAAGAVTT RARAYSDDGE SDESVSVSTS GATDLSLGSV SGTTCLLGSL 240
PLPHCVLGSS VPSPARHRAA ASDDGRGKLA LPFFDFLGVG AT*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During anther development, expressed in anther vacuolar tissue from stage 9 to stage 13. {ECO:0000269|PubMed:20305120}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in root vascular tissue, primordia of lateral roots, leaf collar, and veins of lemma, palea and pistil. {ECO:0000269|PubMed:20305120}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
| Publications
? help Back to Top |
- Leonard LM,Follette VM
Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
Annu Rev Sex Res, 2002. 13: p. 346-88
[PMID:12836736] - Wang L,Li X,Chen Z
Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
[PMID:19135473] - Wang L,Huang H,Wei Y,Li X,Chen Z
Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
[PMID:19549538] - Zhang H, et al.
Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
Plant Cell, 2010. 22(3): p. 672-89
[PMID:20305120] - Zhang H, et al.
Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
[PMID:23256151] - Zhu X, et al.
Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
Plant J., 2015. 82(4): p. 570-81
[PMID:25754973] - Li X, et al.
Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
Plant Cell Environ., 2015. 38(10): p. 2171-92
[PMID:25828772] - Shaar-Moshe L,Hübner S,Peleg Z
Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
BMC Plant Biol., 2015. 15: p. 111
[PMID:25935420]
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