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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G112700.1.p |
Common Name | Sb03g009480, SORBIDRAFT_03g009480 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
GeBP |
Protein Properties |
Length: 405aa MW: 42669.6 Da PI: 4.7664 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G112700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 98.7 | 5.6e-31 | 85 | 184 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdq 86
lfqrlw++e e+++L+G++df+a++g+ +++ d+ fye +++++sf+++ksql+eK+rrLKkK++ + ++ a++g ++f+++h+
Sobic.003G112700.1.p 85 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFDFTKSQLIEKLRRLKKKYRVCAARvAAQGAAFAFRSAHEG 173
79************************99877778*************************************998899************ PP
DUF573 87 kifelskkiWg 97
i+++++ iW+
Sobic.003G112700.1.p 174 AIYDVARHIWR 184
**********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MADDHPHDAA ASSSAGGDED DEGTDTDASN SDLANPQGQD PLPFPDAASV PPHPHPLAPA 60 PEPAGAVPPP QPQPHGPSAD DSRRLFQRLW TDEEELLILR GFLDFTARRG TTFASHQYDT 120 GPFYEEIRRR LSFDFTKSQL IEKLRRLKKK YRVCAARVAA QGAAFAFRSA HEGAIYDVAR 180 HIWRPAFRRG EGGGGSAADA SDEDDINPVA AAAMEDGGGG SASTPTARGR GGRRVRRRTA 240 QELEAPALPL PATSALMITD AAEDRLVVAV ENLVPAIAPP PPLQVPTVSP AAATPSPMPV 300 STGGGATEEA IRSIMSPLLK EFISSVTVAG QTGFGLGLGT GFGGIGGFDI LGLGLGVAGP 360 NPGMPSDDKW RQQQILELEV YLKRIELVRE QVTAALEDLR SSEC*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT065406 | 0.0 | BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds. |
GenBank | JX428457 | 0.0 | JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G04930.2 | 9e-29 | DNA-binding storekeeper protein-related transcriptional regulator |