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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G102300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 23088.2 Da PI: 10.4614 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.4e-10 | 23 | 72 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 +e+ErrRR++++s +L +l+Pk +s K ++ L +A YIk+L Sobic.003G102300.1.p 23 RKEVERRRRQQMKSLCVKLASLIPKeH---YSSKdaMTQLGSLDEAATYIKKL 72 479**********************55...444446***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.05E-10 | 12 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.772 | 18 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.35E-7 | 21 | 77 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.2E-13 | 22 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-7 | 24 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-8 | 24 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MKSRSSSMSN NSGSTTTTTA VQRKEVERRR RQQMKSLCVK LASLIPKEHY SSKDAMTQLG 60 SLDEAATYIK KLKERVEELR QKRTSARLLA AAAGMRRGGG GAGGASTSPA ATTTASGGAG 120 SSEEAGDHMP VAPPAVVEVR QHSDGSSLDV VLISSVERPF KLHEVVTVLQ EEGAETINAN 180 FSVAGTKIFY TIHCRAFSPR IGIEVSRISE RLRALG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G102300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727751 | 0.0 | KJ727751.1 Zea mays clone pUT5692 bHLH transcription factor (bHLH83) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457514.2 | 1e-156 | transcription factor bHLH162 | ||||
TrEMBL | A0A1B6Q2F7 | 1e-155 | A0A1B6Q2F7_SORBI; Uncharacterized protein | ||||
STRING | Sb03g008570.1 | 1e-135 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 | Representative plant | OGRP1345 | 11 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-14 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G102300.1.p |