PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G077100.1.p | ||||||||
Common Name | Sb03g006500, SORBIDRAFT_03g006500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 27582.1 Da PI: 6.5085 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.4e-09 | 91 | 136 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er RRdr+N f Lr +P+ + ++ a+ L Av YI +L Sobic.003G077100.1.p 91 THVEAERLRRDRLNRLFCDLRAAVPTV-----TGMDRASLLADAVGYITKL 136 89************************7.....579*************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.021 | 87 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-14 | 90 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-7 | 91 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-13 | 91 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-7 | 93 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDDPHFMSPF SADDHRNQNP ASSEFMSSDA LEKWLLGNDQ DNVLDNHEDE DPHQDMSSTS 60 LPSPAAPLAG RKRGRKPGSG SRAAGTTIVV THVEAERLRR DRLNRLFCDL RAAVPTVTGM 120 DRASLLADAV GYITKLHGRV EQLQADAEAN KRTTAASLSQ LPCLLFGGSG QELEVRAVHG 180 RDAAALRLTT TVATRHAPAR LMAALRALDL PVQHASVCRV GGITVQDVVV DMAAAGLWGD 240 DCLRTVLLHK LLQESG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 101 | RLRRDR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G077100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457386.2 | 0.0 | transcription factor bHLH14 | ||||
TrEMBL | A0A1W0VW53 | 0.0 | A0A1W0VW53_SORBI; Uncharacterized protein | ||||
STRING | Sb03g006500.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 | Representative plant | OGRP2531 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 1e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G077100.1.p |
Entrez Gene | 8073327 |