PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G076400.1.p
Common NameSb03g006430, SORBIDRAFT_03g006430
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 258aa    MW: 28803.5 Da    PI: 9.4771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G076400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-05227250123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           y+C+ C+ +Fs++ ++++H+++ H
  Sobic.003G076400.1.p 227 YTCKLCSAVFSSQQMYHSHMSLlH 250
                           9*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.954227251IPR007087Zinc finger, C2H2
PROSITE patternPS000280229250IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MERNSYPTKD TRFRQSDNEI SPLHEALRGK TTMPTLSSSE PNDHAHSFKS YYNNSEAIPH  60
QLHSVSTPIP PTSIIASTRL EQSLKKEQEL MRMFLTTPVS EDARRKALSL EPQSIKSLLQ  120
GDPMAILQAH FDIAGVSDPG PIFHDPALHV PKERMHKTLG SSSSSHDDLY GKIPYAKPTF  180
FNQPPVSSLV QREQHVPSGF PSSNSYDAIK EVMGSTINFR RVKKQKYTCK LCSAVFSSQQ  240
MYHSHMSLLH SKGIGNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G076400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457384.21e-166uncharacterized protein LOC8060818
TrEMBLA0A1W0VW350.0A0A1W0VW35_SORBI; Uncharacterized protein
STRINGSb03g006430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1939869
Representative plantOGRP1963722