PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G060400.1.p
Common NameSb03g005180, SORBIDRAFT_03g005180
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GeBP
Protein Properties Length: 407aa    MW: 42859.8 Da    PI: 4.891
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G060400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57396.72.3e-3085184297
                DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdq 86 
                           lfqrlw+++ e+++L+G++df+a++g+   +++ d+  fye +++++sf+++ksql+eK+rrLKkK++   ++ a++g  ++f+++h+ 
  Sobic.003G060400.1.p  85 LFQRLWTDDEELLILRGFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFDFTKSQLIEKLRRLKKKYRVGAARvAAQGAAFAFRSAHEG 173
                           79************************99877778**********************************99999789************* PP

                DUF573  87 kifelskkiWg 97 
                            i+++++ iW+
  Sobic.003G060400.1.p 174 AIYDVARHIWR 184
                           **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.2E-2686183IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MADDHPHDAA ASSSAGGDED DEGTDTDASN SDLANPQGQD PLPFPDAASV PPHPHPLAPA  60
PEPAGAVPPP QPQPHGPSAD DSRRLFQRLW TDDEELLILR GFLDFTARRG TTFASHQYDT  120
GPFYEEIRRR LSFDFTKSQL IEKLRRLKKK YRVGAARVAA QGAAFAFRSA HEGAIYDVAR  180
HIWRPAFRRG EGGGGSAADA SDEDDINPVA AAAMEDGGGG SASTPTPTAR GRGGRRVRRR  240
TAQELEAPAL PLPATSALMI TDAAEDRLVV AVENLVPTIA PPPPLQVPTV SPAAATPSPM  300
PVSTGGGATE EAIRSIMSPL LKEFISSVTV AGQTGFGLGL GTGFGGIGGF DILGLGLGVA  360
GPNPGMPSDH KWRQQQILEL EVYLKRIELV REQVTAALED LRSSEC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G060400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654060.0BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds.
GenBankJX4284570.0JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457303.10.0probable transcription factor At3g04930
TrEMBLC5XP660.0C5XP66_SORBI; Uncharacterized protein
STRINGSb03g005180.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.28e-28DNA-binding storekeeper protein-related transcriptional regulator