PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.003G053200.1.p | ||||||||
Common Name | Sb03g004600, SORBIDRAFT_03g004600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 30207.5 Da PI: 6.7744 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.3e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ ++++G +W++I++ g+ R++k+c++rw +yl Sobic.003G053200.1.p 16 KGLWSPEEDERLASHIARFGVSCWSSIPELAGLQRCGKSCRLRWMNYL 63 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 1e-14 | 69 | 111 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rgr+++ E++l++ ++k lG+ W+ Ia++++ gR+++++k++w+ Sobic.003G053200.1.p 69 RGRFSQHEEDLIISLHKALGNS-WSQIAARLP-GRSDNEIKNFWN 111 89******************99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 8 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.968 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.38E-28 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-11 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.06E-10 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 22.889 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-25 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-9 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MGRVHPCCSE EKKVRKGLWS PEEDERLASH IARFGVSCWS SIPELAGLQR CGKSCRLRWM 60 NYLRPDLKRG RFSQHEEDLI ISLHKALGNS WSQIAARLPG RSDNEIKNFW NARLRKKLRQ 120 KEASTSSTAV SKEPAARRNQ PNANAEVDDR SKPAPSVFTP FVPDHVAAAA GASGASSCDD 180 SSAAGSFFAD PAAATCAAVH LADGAADDRN AAAAESGVTP TPSLTTSTSA CTDDARGSCD 240 DGFFRAMVDD PSFLFGDFYL DGDAGHHGQI MSFWEGHAFS * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-27 | 16 | 118 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 112 | 118 | RLRKKLR |
2 | 113 | 119 | LRKKLRQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.003G053200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457273.1 | 0.0 | myb-related protein 308 | ||||
TrEMBL | C5XNH0 | 0.0 | C5XNH0_SORBI; Uncharacterized protein | ||||
STRING | Sb03g004600.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14448 | 17 | 25 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26660.1 | 3e-61 | myb domain protein 86 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.003G053200.1.p |
Entrez Gene | 8078491 |