PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G050500.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 177aa MW: 18650.3 Da PI: 10.178

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G050500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.2	3.6e-13	61	106	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r rr+++NRe+ArrsR+RK+ ++ eL++ +++Le N++L+ ++e Sobic.003G050500.1.p 61 RRFRRRISNRESARRSRARKQRYLYELRDSAAVLERGNRDLAARAE 106 688**************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-7	55	121	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	59	109	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.9E-10	61	106	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.2E-8	61	110	No hit	No description
SuperFamily	SSF57959	1.29E-8	61	109	No hit	No description
PROSITE pattern	PS00036	0	64	79	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAFSGCMTCI DMQISPAMAK QHVGFGPDHT AGGPFPTQPA AASWPGVDAG AAAAECVDHQ 60 RRFRRRISNR ESARRSRARK QRYLYELRDS AAVLERGNRD LAARAEAARG RLALALLANA 120 ALRAEAAALS RRLAAARRDL VLLGRLYAGA VAAGGVDGEC CLGSTDTEQM VASLIA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	80	RRSRARKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G050500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457264.2	1e-122	ocs element-binding factor 1
TrEMBL	C5XND9	1e-120	C5XND9_SORBI; Uncharacterized protein
STRING	Sb03g004400.1	1e-106	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20974	5	7

Link Out ? help Back to Top
Phytozome	Sobic.003G050500.1.p