PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G049400.1.p
Common NameSb03g004290, SORBIDRAFT_03g004290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 197aa    MW: 20655.6 Da    PI: 10.6977
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G049400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.21.5e-12104164262
                           XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                           ke  r +r+ +NR++A+  R+RKka++ eLe k+k Le  N +L +++++l++e  +l++ 
  Sobic.003G049400.1.p 104 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKDLEVRNAELEQRVSTLQNENNTLRQI 164
                           78899***************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-13103167IPR004827Basic-leucine zipper domain
PfamPF001706.5E-11104165IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.208105168IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-16108167No hitNo description
SuperFamilySSF579596.88E-12108165No hitNo description
CDDcd147042.98E-13108158No hitNo description
PROSITE patternPS000360110125IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAAQEQEHEK QQAKTSTTSS LPSSSERSSS SAPNNLREGG AESDEEIRRV PEMGGASASA  60
SSGAGADERP KEDGGKQGGQ LAAAAGAQPP AAAGKKRGRT AGDKEQNRLK RLLRNRVSAQ  120
QARERKKAYL TELEAKAKDL EVRNAELEQR VSTLQNENNT LRQILKNTTA HASKRSSGGG  180
GGKGGDGGKK HHFAKS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.150870.0panicle
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G049400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766420.0EU976642.1 Zea mays clone 986002 transcription factor HY5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455099.11e-136transcription factor HY5 isoform X1
SwissprotQ9SM503e-46HY5_SOLLC; Transcription factor HY5
TrEMBLC5XND81e-135C5XND8_SORBI; Uncharacterized protein
STRINGSb03g004290.11e-135(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Representative plantOGRP20811737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-29bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]