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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G046800.1.p | ||||||||
Common Name | Sb03g004090, SORBIDRAFT_03g004090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | G2-like | ||||||||
Protein Properties | Length: 503aa MW: 52726.7 Da PI: 5.8799 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.3 | 1.3e-31 | 276 | 331 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Sobic.003G046800.1.p 276 KARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 331 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.27E-17 | 273 | 334 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.69 | 273 | 333 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-28 | 274 | 334 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-26 | 276 | 331 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-6 | 278 | 329 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010452 | Biological Process | histone H3-K36 methylation | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:1903507 | Biological Process | negative regulation of nucleic acid-templated transcription | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MASSPSDLTL DYKPNGNAAA YAVTIPKPQQ EPLVDGHHHH HHLTTAEQAT QKLREFLARL 60 EEEWLKIDAF KRELPLCMQL LNHAMESYRQ QLEAYQMGSL QGAPARPLVL EEFMPLKNIG 120 IDAAAADKMG NPPSEKASWM ESAQLWNGPA AATAADMAAK GPQTPKESSE HPLPIDTLCA 180 HDAAAAGQRN GGGAFLPFAK DKTASAAEGA ALPELALAPA DKDAGDAERK PYLDASSNNG 240 VLGARRDVVQ NGVKPGTNAP EGQQAAATPP PQTHRKARRC WSPELHRRFV NALQILGGAQ 300 VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPMPAPP APATAAPQLV VLGGIWVPPE 360 YATQAAGQAI YGAHPATQPH YTAAVAAQEY YPSPAAVHHL QHHPAAAAAA MVHRAAAAPQ 420 QAAYKAAAAA MAGSPPGSEG RGSAGGGSVG GGGGGRERSE SIEEEGEGEE REEDDDDDDD 480 DMAAAKADGE EAAAGAGAGV KY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-13 | 276 | 329 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-13 | 276 | 329 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-13 | 276 | 329 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-13 | 276 | 329 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-13 | 276 | 329 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-13 | 276 | 329 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-13 | 276 | 329 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-13 | 276 | 329 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-13 | 276 | 329 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-13 | 276 | 329 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-13 | 276 | 329 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-13 | 276 | 329 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250|UniProtKB:Q6Z869}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00261 | DAP | Transfer from AT2G03500 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G046800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086572 | 0.0 | BT086572.2 Zea mays full-length cDNA clone ZM_BFc0184N23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457252.1 | 0.0 | transcription factor NIGTH1 | ||||
Swissprot | Q5VRW2 | 1e-145 | NOH1_ORYSJ; Transcription factor NIGTH1 | ||||
TrEMBL | C5XMT5 | 0.0 | C5XMT5_SORBI; Uncharacterized protein | ||||
STRING | Sb03g004090.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9773 | 33 | 38 | Representative plant | OGRP4303 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 6e-74 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G046800.1.p |
Entrez Gene | 8056535 |
Publications ? help Back to Top | |||
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