PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.003G046600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 191aa MW: 20992.2 Da PI: 9.251 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 137 | 2e-42 | 51 | 173 | 2 | 128 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaeaagssasas 89 +s r+pt +ErEnn++RERrRR++aa+iyaGLRa+++y+lpk+aD+n+Vl+ALc+eAG+ v+dDG++ r +g a+ +s++ + Sobic.003G046600.2.p 51 TSLRHPTPRERENNRQRERRRRQVAARIYAGLRAHAGYALPKHADQNDVLRALCAEAGYHVDDDGNVTRhQGVDDG--AAGPSCSSDHQ 137 789****************************************************************993344433..33333333333 PP DUF822 90 pesslqsslkssalaspvesysaspksssfpspssldsi 128 ++ s++ +++ a++ ++++ +++++ + +++ ++ Sobic.003G046600.2.p 138 KSPSVS---GTTEAATQQQQQQLLQQQEQLLQQQQQQQQ 173 333333...122222222222222222222222222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 4.4E-32 | 53 | 156 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MERQAGAGRE EGEAAAAKAV APVVAQRKGC IRSTQGPWTV RRRGRGGGLT TSLRHPTPRE 60 RENNRQRERR RRQVAARIYA GLRAHAGYAL PKHADQNDVL RALCAEAGYH VDDDGNVTRH 120 QGVDDGAAGP SCSSDHQKSP SVSGTTEAAT QQQQQQLLQQ QEQLLQQQQQ QQQEEEVKMS 180 LELTLSFAYM * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 1e-11 | 74 | 119 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 1e-11 | 74 | 119 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 1e-11 | 74 | 119 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 1e-11 | 74 | 119 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.003G046600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU947756 | 1e-124 | EU947756.1 Zea mays clone 356679 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001357917.1 | 2e-74 | uncharacterized LOC103649675 | ||||
TrEMBL | A0A1W0VVQ5 | 1e-135 | A0A1W0VVQ5_SORBI; Uncharacterized protein | ||||
STRING | Sb03g004070.1 | 5e-82 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13201 | 30 | 32 | Representative plant | OGRP10084 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19350.3 | 1e-15 | BES1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.003G046600.2.p |