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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G035100.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
NAC |
Protein Properties |
Length: 493aa MW: 54961.8 Da PI: 8.0439 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G035100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 114.2 | 1.4e-35 | 98 | 240 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77
lp+G++F+Ptd+el+ e+L++kv+++ +++ +i+++d i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+
Sobic.003G035100.1.p 98 LPAGVKFDPTDQELI-EHLEAKVKDEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiq 182
799************.99******999677544333..3444433445**********.555666799******************756 PP
NAM 78 ......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+ +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l
Sobic.003G035100.1.p 183 tecdvhKGETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 240
66664433778************.999***********5547999999*********98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 493 aa
Download sequence Send
to blast |
MYPSPSLLAL SFAPLVLLLL RLALRAARRR NKNHPSPITT THACALPPGA AYEPDMNRGH 60 SSSSKLINEK LEEHRISTAK HCPHCGEKID SKPDWVGLPA GVKFDPTDQE LIEHLEAKVK 120 DEGSRSHPLI DEFIPTIDGE DGICYTHPEK LPGVTRDGLS KHFFHRPSKA YTTGTRKRRK 180 IQTECDVHKG ETRWHKTGKT RPVMVNGRQK GCKKILVLYT NFGKHRKPEK TNWVMHQYHL 240 GDLEEEKEGE LVVCKIFYQT QPRQCSWSSD RGTAATAAMA ATTMAAQEQH RRDSGSGSCS 300 SRDHEVSATS FPAGYTVTTA VEMQQHMKQP ADHFSFAPFR KTFDQEVGIG GDQVPSNQLG 360 RSEPHHAGQG QQPHGPVLST TTAVPATAFL ISRPSNPVST IVPPEMQHAS VVLDHDQFHV 420 PAILLHHHDK FQPQHQQHQP QQKLDRRSAG LEELIMGCTS STSTKGETSI AHPQETEWPY 480 PYWPPDNQDH HG*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM017005 | 0.0 | KM017005.1 UNVERIFIED: Miscanthus lutarioriparius NAC7-like mRNA, complete sequence. |