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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G028000.1.p | ||||||||
Common Name | Sb03g002630, SORBIDRAFT_03g002630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 26342.1 Da PI: 5.8429 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 4.7e-17 | 58 | 106 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g Sobic.003G028000.1.p 58 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 106 9****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.6E-12 | 56 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-20 | 57 | 115 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.2E-34 | 57 | 120 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.5E-31 | 57 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.8 | 57 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-9 | 58 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.79E-29 | 58 | 116 | No hit | No description |
PRINTS | PR00367 | 3.3E-9 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAMSELSSDT SSTSSYSSDP STSTSPRAAA PCSAAAAVSG KKRPRSNGGG ESGSAPAYRG 60 VRMRAWGKWV SEIREPRKKS RIWLGTFPCP EMAARAHDVA ALSIKGARAV LNFPDLARHL 120 PRPASLAPRD VQAAAARAAL MHMHSDGAGS GSGSGGSSSP SSSSSSSTRD AADTDGAAAH 180 DEPEPEPEPQ RQHERQPVEM AAELVFDELA PLWVEDVVEF GGPPSDHTWT PCDGLDAAVG 240 FLHPLPLLWD Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-16 | 58 | 114 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00467 | DAP | Transfer from AT4G32800 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G028000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976827 | 1e-120 | EU976827.1 Zea mays clone 991178 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454993.1 | 1e-180 | ethylene-responsive transcription factor TINY | ||||
TrEMBL | C5XLT0 | 1e-178 | C5XLT0_SORBI; Uncharacterized protein | ||||
STRING | Sb03g002630.1 | 1e-179 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G028000.1.p |
Entrez Gene | 8084327 |