PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G026300.1.p
Common NameSb03g002480, SORBIDRAFT_03g002480
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family BES1
Protein Properties Length: 349aa    MW: 36561 Da    PI: 8.6046
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G026300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822207.53.8e-64171601145
                DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasas 89 
                           g++gr+ptw+ErEnnkrRERrRRaiaaki+aGLRa+G+yklpk++DnneVlkALc+eAGwvve+DGttyrkgskp+e+++++g+s s s
  Sobic.003G026300.1.p  17 GAGGRMPTWRERENNKRRERRRRAIAAKIFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGSKPMERMDHIGCSVSPS 105
                           689************************************************************************************** PP

                DUF822  90 pesslqsslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsvlsl 145
                           p+ss+q         sp++sy+asp+sssfps +s+ +++ ++        + +lp+l++ s+
  Sobic.003G026300.1.p 106 PCSSYQ--------VSPRASYNASPTSSSFPSGASSPFLPPNEMvnggidgNPILPWLKTFSN 160
                           ******........7888888888888888888888777766556667776888888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.3E-6319158IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MASGGGGGAG GGLGAAGAGG RMPTWREREN NKRRERRRRA IAAKIFAGLR AHGGYKLPKH  60
CDNNEVLKAL CNEAGWVVEP DGTTYRKGSK PMERMDHIGC SVSPSPCSSY QVSPRASYNA  120
SPTSSSFPSG ASSPFLPPNE MVNGGIDGNP ILPWLKTFSN GTPSKKHPLL PPLLIHGGSI  180
SAPVTPPLSS PSARTPRMKT DWDEATIQPP WHGANSPTIV NSTPPSPGRS IAPDPAWLAG  240
IQISSTSPNS PTFSLVSTNP FSVFKESIPV GNSSSRMCTP GQSGTCSPAI PGMLQHSDVH  300
MMDAVSDEFA FGSSTNGAQQ AAGLVRAWEG ERIHEDSGSD DLELTLKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A6e-232192372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B6e-232192372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C6e-232192372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D6e-232192372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.83610.0panicle| root
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G026300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365570.0BT036557.1 Zea mays full-length cDNA clone ZM_BFb0123H10 mRNA, complete cds.
GenBankEU9684910.0EU968491.1 Zea mays clone 321364 brassinazole-resistant 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454981.10.0protein BZR1 homolog 2
SwissprotQ0JPT41e-166BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBLC5XL780.0C5XL78_SORBI; Uncharacterized protein
STRINGSb03g002480.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Representative plantOGRP15951542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.17e-91BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]