PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G021800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 413aa    MW: 44071.3 Da    PI: 10.2474
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G021800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35.2e-11276321550
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                           kr +r   NR +A+rsR RK+++i eLe+ v +L++e +aL  ++ 
  Sobic.003G021800.2.p 276 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVA 321
                           8999*********************************999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.9E-14272336IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.76274330IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.4E-14276330No hitNo description
SuperFamilySSF579591.55E-11276330No hitNo description
PfamPF001707.9E-10276326IPR004827Basic-leucine zipper domain
CDDcd147031.93E-23277327No hitNo description
PROSITE patternPS000360279294IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
SQRRHGLAPA HPASSGIRSK QQKRELKKGE AARAIPGRHR AAPARVVVAL ATLPPGTSGT  60
AGGRFRRCAT DPPFPRVALI PPNRTNARRG VPAMAQLPPK IPTMAPAWPE FGGGHHHHHH  120
QQQQRSPSVG TFLAAPMPPP PLHHPPPQQQ QPSWVDEFLD FSAAKRGAHR RSVSDSVAFL  180
EAGPGDGNAG VGAHDFDRLD DDQLLSMFSD DLQPPPPPTT TTAQAAPVAS SSSPSDHNSI  240
NDEKTDRGEA EEAQSKCHGD ATADAAPASA APVDPKRVKR ILANRQSAQR SRVRKLQYIS  300
ELERSVTSLQ TEVSALSPRV AFLDHQRSLL TLGNSHLKQR IAALAQDKIF KDAHQEALRK  360
EIERLRQIYQ QQSLKSGGGE APAPDAAPVC GDKDDMIGSS EGTAAPALGP PS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.210190.0panicle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and panicles. {ECO:0000269|PubMed:18065552}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G021800.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612660.0BT061266.1 Zea mays full-length cDNA clone ZM_BFb0128B20 mRNA, complete cds.
GenBankKJ7275570.0KJ727557.1 Zea mays clone pUT5417 bZIP transcription factor (bZIP117) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454954.10.0basic leucine zipper 2
SwissprotQ5QNI51e-104BZP02_ORYSJ; Basic leucine zipper 2
TrEMBLC5XL360.0C5XL36_SORBI; Uncharacterized protein (Fragment)
STRINGSb03g002050.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.16e-85bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]