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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.003G021800.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 413aa MW: 44071.3 Da PI: 10.2474 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.003G021800.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 34.3 | 5.2e-11 | 276 | 321 | 5 | 50 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++
Sobic.003G021800.2.p 276 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVA 321
8999*********************************999987765 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 413 aa
Download sequence Send
to blast |
SQRRHGLAPA HPASSGIRSK QQKRELKKGE AARAIPGRHR AAPARVVVAL ATLPPGTSGT 60 AGGRFRRCAT DPPFPRVALI PPNRTNARRG VPAMAQLPPK IPTMAPAWPE FGGGHHHHHH 120 QQQQRSPSVG TFLAAPMPPP PLHHPPPQQQ QPSWVDEFLD FSAAKRGAHR RSVSDSVAFL 180 EAGPGDGNAG VGAHDFDRLD DDQLLSMFSD DLQPPPPPTT TTAQAAPVAS SSSPSDHNSI 240 NDEKTDRGEA EEAQSKCHGD ATADAAPASA APVDPKRVKR ILANRQSAQR SRVRKLQYIS 300 ELERSVTSLQ TEVSALSPRV AFLDHQRSLL TLGNSHLKQR IAALAQDKIF KDAHQEALRK 360 EIERLRQIYQ QQSLKSGGGE APAPDAAPVC GDKDDMIGSS EGTAAPALGP PS*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots and panicles. {ECO:0000269|PubMed:18065552}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269|PubMed:18065552}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT061266 | 0.0 | BT061266.1 Zea mays full-length cDNA clone ZM_BFb0128B20 mRNA, complete cds. |
GenBank | KJ727557 | 0.0 | KJ727557.1 Zea mays clone pUT5417 bZIP transcription factor (bZIP117) mRNA, partial cds. |