PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G007000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 804aa    MW: 91511.1 Da    PI: 9.5242
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G007000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.32.8e-19119198190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fYn Y+ e+GF +rk +++++ +n+ +t++++vCs+eg +++ + +         + rtgCka++++++++d+ w+++++e++HnH+l
  Sobic.003G007000.1.p 119 DFYNLYSWEIGFGIRKGRNRTN-ENNYMTRQDLVCSCEGLPTNINAS---------SCRTGCKAMIRLHRSSDHGWVISRVETKHNHPL 197
                           6*****************9999.5555*************9997655.........99******************************9 PP

                  FAR1  90 a 90 
                           +
  Sobic.003G007000.1.p 198 S 198
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-15119198IPR004330FAR1 DNA binding domain
PfamPF105512.6E-28319412IPR018289MULE transposase domain
PROSITE profilePS509669.891601636IPR007527Zinc finger, SWIM-type
SMARTSM005750.0096611638IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MTAGDQSCKQ TAADSSTLCS SQFTQSMANQ VPNPMSQGPL PSGNEICADR PSFIHSNPVS  60
TGPIPLRRKR GKHGPEARIA PLEENPVTQA MKSYINRLGE PVFLPAVGME FNSAKEAKDF  120
YNLYSWEIGF GIRKGRNRTN ENNYMTRQDL VCSCEGLPTN INASSCRTGC KAMIRLHRSS  180
DHGWVISRVE TKHNHPLSAT YGENKQWPSH SEIDPMTKDF VQKLRENNIP IGRVCSILGV  240
HGCQAVQPIR REAVRSLCAR LAQENIKDDI GKTVKLLQEM KRSDVGMDIT FAVDDDGKIT  300
SLLWCTGKNR SDYAKFGDVV TFDTTYRTNL YNLPFGLFVG VNNHFQSIVF GGVLLTSERI  360
EDFEWCFNNF VEIMGGKAPT TILTDQCQAM ASAIKSTLKN TRHRWCRWHV LRKTKQKVGP  420
PYSKHSNFKK EFNKLVTEET MVNRFERKWR QLIRKYNLEN NQFLQRLYKY RSKWAKPYFM  480
DIFCAGMTST QRSESANHML KQFIQRSAPM HMFVRKFNEF QMDRNDQEGK EVHLTKQMRR  540
KRRVGVPIER HAESIYTRRM YDKFYNELYS SGGYVIKSKD NDGNFEVAHS YTDGNPDQVC  600
YKVRYDGGDN VYCQCGLYEH MGMLCRHSLK VLVHLDVKEV PSGNIMPRWL KNDPEPETSI  660
SATRRPDISG ASVNVLKKRA LLNCILQVAY GPDDISDEAF TQAMSVVDSL VVRTTSSSTA  720
TLQSPITDNN TNYKQSVAPP SVPMPKSSST IRCPDRPINT GRPPHSTLKS WKDQQKRARC  780
ASTDEENPRE AKTRRIVDVM AFE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G007000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310926.10.0protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1B6Q0S60.0A0A1B6Q0S6_SORBI; Uncharacterized protein
STRINGSb03g000788.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-76FAR1-related sequence 5