PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G004500.1.p
Common NameSb03g000570, SORBIDRAFT_03g000570
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 623aa    MW: 67721.5 Da    PI: 7.6102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G004500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12468514455
                           HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Sobic.003G004500.1.p 468 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 514
                           799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-5062247IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831464513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-19467531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.86E-15467518No hitNo description
Gene3DG3DSA:4.10.280.102.3E-18468527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10468514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16470519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MVMKMELEDD GAMGGRGTGG MWTEEDRALG AAVLGADAFA YLTKGGGAIS EGLVAASLPD  60
DLQNKLQELV ESESPGTGWN YAIFWQLSRT KSGDLVLGWG DGSCREPRDG EVGAAASAGS  120
DDTKQRMRKR VLQRLHIAFG VADEEDYAPG IDQVTDTEMF FLASMYFAFP RRTGGPGQAF  180
AAGIPLWVPN SERKVFPANY CYRGFLANAA GFRTIVLVPF ESGVLELGSM QHIAESSDTI  240
QSIRSVFAGT SGNKTAVQRH EGNGPAPPER SPSLAKIFGK DLNLGRPSVG PAVGVSKVDE  300
RTWEQRSAAG GTSLLPNVQK GLQNFTWSQA RGLNSHQQKF GNGVLIVSNE AAHRNNGAVD  360
SPSAAQFQLQ KAPQLQKLQL QKLPVVQKTP QLVNQQPMQP QVPRQIDFSA GSSSKPGVLV  420
TRAAAVLDGE SAEVDGLCKE EGPPPVIEDR RPRKRGRKPA NGREEPLNHV EAERQRREKL  480
NQRFYALRAV VPNISKMDKA SLLGDAITYI TDLQKKLKEM ESERERLLES GMVDPRERAP  540
RPEVDIQVVQ DEVLVRVMSP MDNHPVRKVF QAFEEAEVRV GESKVTGNNN GTVVHSFIIK  600
CPGAEQQTRE KVIAAMSRAM SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-28462524264Transcription factor MYC2
5gnj_B3e-28462524264Transcription factor MYC2
5gnj_E3e-28462524264Transcription factor MYC2
5gnj_F3e-28462524264Transcription factor MYC2
5gnj_G3e-28462524264Transcription factor MYC2
5gnj_I3e-28462524264Transcription factor MYC2
5gnj_M3e-28462524264Transcription factor MYC2
5gnj_N3e-28462524264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449457RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G004500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0549530.0BT054953.1 Zea mays full-length cDNA clone ZM_BFc0103E04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312143.10.0transcription factor bHLH13 isoform X1
TrEMBLC5XJK20.0C5XJK2_SORBI; Uncharacterized protein
STRINGSb03g000570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.38e-72bHLH family protein