PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G002600.1.p
Common NameSb03g000400, SORBIDRAFT_03g000400
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 498aa    MW: 52941.1 Da    PI: 6.5686
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G002600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.21.6e-27196250156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           k +++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++
  Sobic.003G002600.1.p 196 KRKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGMDCLTRHNIASHLQKYRSH 250
                           5799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.019193252IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-26194253IPR009057Homeodomain-like
SuperFamilySSF466898.6E-18195253IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-27196250IPR006447Myb domain, plants
PfamPF002496.3E-7199248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MLGVSTLRSP SRSSSKADQH CGGGFVGDHH VVFPTSGGGS DCCDGFAMVD VDDNLLDYID  60
FSCDVPFFDA DGDILPDLEV DPTELLAEFS STPPPDDLLL VHVDDEAANN KPPVVPDDDV  120
KQHHLAVVTT AAAQEEKQTC GGDEKHVAAS KQTTTEEDYS AACAGAAVSD TKSSASAAES  180
HSKKKAAAGN KNSHGKRKVD WTPELHRRFV QAVEQLGIDK AVPSRILEIM GMDCLTRHNI  240
ASHLQKYRSH RKHLMAREAE AATWAQKRHM YAAAAGGGAP RTDAPHASRP WVVPTIGFPP  300
PAPPPFCRPL HVWGHPPHAA AAEAAAAVAA PPTPMLPVWP RHLAPPRPLP PWAHPHPPAV  360
DPAFWHQQYN AARKWGPQAA AVTQGTPCVP PPAAMLPRFP VPGMVPHPMY RPTMVPPPPP  420
PPPPQPSTKL AELQLELDTH PSKESIDAAI GDVLVKPWLP LPLGLKPPSL DSVMSELHKQ  480
GVPSIPPAAT ATAIATG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14193248257ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.191310.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G002600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454868.20.0probable transcription factor GLK2 isoform X2
SwissprotQ5NAN51e-117GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLC5XJI70.0C5XJI7_SORBI; Uncharacterized protein
STRINGSb03g000400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Representative plantOGRP28401529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-49GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]