PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G000800.1.p

Common Name

Sb03g000260, SORBIDRAFT_03g000260

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Nin-like

Protein Properties

Length: 290aa MW: 30724.3 Da PI: 7.4606

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G000800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.3	6.2e-23	20	66	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ Sobic.003G000800.1.p 20 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRTHGIVRWPYRKLV 66 6899*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.506	3	88	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-21	21	66	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MASDAPTQQP APQQKPTRVS LSYEEISKLF SLPIAEAASI LGVCTSVLKR ICRTHGIVRW 60 PYRKLVSGKA GDDTKGPDRD KAKELLELSK IVKQKASSAS GPSIVSSSTS QGAAKSQQGS 120 SKAGQISVSP PAGKQNTSPS LAHGSQAKAI PSYMDDFKYG FPSSGLSCET MKWWGTSSDT 180 DCVPAKDGSH EAHDLTTHEP SKGMTDDDEL DWGADEAEAE AEADGAVTAE ASAQLCSLRR 240 KAVDDGRKLL NGGNRRGQEF SRLNKRQKLV LAQVFGASLP DVVFLVSSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G000800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038614	0.0	BT038614.1 Zea mays full-length cDNA clone ZM_BFb0296N20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002454862.1	0.0	uncharacterized protein LOC8077539
TrEMBL	C5XJG9	0.0	C5XJG9_SORBI; Uncharacterized protein
STRING	Sb03g000260.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42
Representative plant	OGRP8668	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	2e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sobic.003G000800.1.p
Entrez Gene	8077539