|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sobic.002G425600.4.p |
Common Name | Sb02g043620, SORBIDRAFT_02g043620 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
Family |
bZIP |
Protein Properties |
Length: 265aa MW: 29234 Da PI: 10.3503 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G425600.4.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 50.3 | 5.2e-16 | 183 | 229 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
+r++r++kNRe+A rsR+RK+a++ eLe+k++ Le+eN++L+ +l++l
Sobic.002G425600.4.p 183 RRQKRMIKNRESAARSRARKQAYTNELENKIARLEEENERLR-KLKML 229
79****************************************.67766 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MGVQTMSSHS HGDDARRGLP LPLPRQGSVY GLTLTEVETQ LGEPLRTMNL DDLLRTVLPA 60 APAPNAAKKT VDEVWRDIQS AGARGGGARQ PSMGEMTLED FLSRAGVAVD TAPHWMHQYP 120 PQQQYALQLG AAAPGPGPAL DAAYRDRPVG VFLSNSHSQV AGRKRGAAAA VPGDGVVERT 180 VERRQKRMIK NRESAARSRA RKQAYTNELE NKIARLEEEN ERLRKLKMLE PLEPPPEQHE 240 RLPLPQPERK QQHHHLRRTN SASF*
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 162 | 185 | RKRGAAAAVPGDGVVERTVERRQK |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |