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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G425600.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 319aa MW: 34627.1 Da PI: 10.3033 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G425600.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 49.6 | 8.5e-16 | 183 | 234 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk.eleelkke 55
+r++r++kNRe+A rsR+RK+a++ eLe+k++ Le+eN++L+k +l+e kk+
Sobic.002G425600.2.p 183 RRQKRMIKNRESAARSRARKQAYTNELENKIARLEEENERLRKlKLDETKKM 234
79***************************************98677777776 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MGVQTMSSHS HGDDARRGLP LPLPRQGSVY GLTLTEVETQ LGEPLRTMNL DDLLRTVLPA 60 APAPNAAKKT VDEVWRDIQS AGARGGGARQ PSMGEMTLED FLSRAGVAVD TAPHWMHQYP 120 PQQQYALQLG AAAPGPGPAL DAAYRDRPVG VFLSNSHSQV AGRKRGAAAA VPGDGVVERT 180 VERRQKRMIK NRESAARSRA RKQAYTNELE NKIARLEEEN ERLRKLKLDE TKKMEPNEEH 240 VHSLDSSIHP QFHSKSLSPN VGTTGATTGA ARAAAIAATG EEAAAPPPPA NEFRQFLMRR 300 PWAGRPYMFI VKLSRASN*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 162 | 185 | RKRGAAAAVPGDGVVERTVERRQK |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. |
Functional Description ? help
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Source |
Description |
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |