PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G424000.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 334aa    MW: 37184.1 Da    PI: 9.3389
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G424000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.3e-104988544
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                          k  rr+++NReAAr+sR+RKka++++Le    +L +  ++
  Sobic.002G424000.3.p 49 KTMRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 88
                          7789************************855444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-644108IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.454791IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.63E-74992No hitNo description
PfamPF001705.6E-74990IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.0E-85094No hitNo description
PROSITE patternPS0003605267IPR004827Basic-leucine zipper domain
PfamPF141448.4E-34131206IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MADASSRTDT SIVLDDIDKN QRMENGSGAV LPSNSSDRSD RSDKPLDQKT MRRLAQNREA  60
ARKSRLRKKA YVQQLESSKL KLAQLEQELQ KARQQGIFIS SSGDQTHAMS GNGALTFDIE  120
YARWLEDQNK QINELRTAVN AHASDSDLRL IVDGIMAHYD EIFKVKGVAA KADVFHILSG  180
MWKTPAERCF LWLGGFRPSE LLKLLANHLE PLTEQQMLGL NNLQQSSQQA EDALSQGMEA  240
LQQSLAETLA GSLGPSGSSG NVANYMGQMA MAMGKLGTLE NFLRQADNLR QQTLHQMQRI  300
LTIRQASRAL LAIHDYFSRL RALSSLWLAR PRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.179280.0ovary| root| shoot
Functional Description ? help Back to Top
Source Description
UniProtPlays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G424000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0615860.0BT061586.1 Zea mays full-length cDNA clone ZM_BFb0161M21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309916.10.0transcription factor TGA2.1
RefseqXP_021309917.10.0transcription factor TGA2.1
RefseqXP_021309918.10.0transcription factor TGA2.1
RefseqXP_021309919.10.0transcription factor TGA2.1
RefseqXP_021309920.10.0transcription factor TGA2.1
RefseqXP_021309921.10.0transcription factor TGA2.1
SwissprotQ7X9930.0TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBLA0A1B6QGF40.0A0A1B6QGF4_SORBI; Uncharacterized protein
STRINGSb02g043480.20.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-135TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  4. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]
  5. Chern M, et al.
    A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.
    PLoS Genet., 2016. 12(5): p. e1006049
    [PMID:27176732]