PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G418100.2.p | ||||||||
Common Name | Sb02g042990, SORBIDRAFT_02g042990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 379aa MW: 40642.7 Da PI: 7.1833 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.6 | 3.5e-10 | 170 | 216 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l Sobic.002G418100.2.p 170 KRAKRIIANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL 216 9****************************************988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.1E-15 | 166 | 230 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.53 | 168 | 231 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.9E-10 | 170 | 224 | No hit | No description |
SuperFamily | SSF57959 | 9.64E-11 | 170 | 221 | No hit | No description |
Pfam | PF00170 | 3.4E-9 | 170 | 215 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.00E-22 | 171 | 220 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MAMPPKPGDP PQRSPGRSPN LNLPCPLPPV PGGAPAPPPQ HQPGAGLPPP RVGHHRRARS 60 EVAFRFPDDL AGAGAGGFDE IGSEDDLFST FMDMDKIAGA DRDRAAETSS PPRPAKHRHS 120 ASFDGFGMGA GAGGPGGQQD GGGGVFGEVM EAKKAMSSEQ LAELAAIDPK RAKRIIANRQ 180 SAARSKERKA RYITELERKV QTLQTEATTL SAQLTLFQRD TTGLSAENAE LKIRLQAMEQ 240 QAQLRDALND ALKQEVERLK IATGEMSKSN EQFNMGMQHI SYSPSFFQLS EQHTVQQHGN 300 IQLPHHFQQP PPNVPSHQML SHPNSLSDMM QQDSLGRLQG LDIGKGSMAV KSEAEVVVKS 360 EGSSISAGIF FIPFVISS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00303 | DAP | Transfer from AT2G40620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G418100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964870 | 0.0 | EU964870.1 Zea mays clone 282242 transcription factor RF2b mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002463392.1 | 0.0 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 1e-142 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A1W0W7V1 | 0.0 | A0A1W0W7V1_SORBI; Uncharacterized protein | ||||
STRING | Sb02g042990.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2683 | 36 | 83 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 5e-84 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G418100.2.p |
Entrez Gene | 8074450 |
Publications ? help Back to Top | |||
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