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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G418100.2.p |
Common Name | Sb02g042990, SORBIDRAFT_02g042990 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 379aa MW: 40642.7 Da PI: 7.1833 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G418100.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 31.6 | 3.5e-10 | 170 | 216 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51
kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l
Sobic.002G418100.2.p 170 KRAKRIIANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL 216
9****************************************988765 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MAMPPKPGDP PQRSPGRSPN LNLPCPLPPV PGGAPAPPPQ HQPGAGLPPP RVGHHRRARS 60 EVAFRFPDDL AGAGAGGFDE IGSEDDLFST FMDMDKIAGA DRDRAAETSS PPRPAKHRHS 120 ASFDGFGMGA GAGGPGGQQD GGGGVFGEVM EAKKAMSSEQ LAELAAIDPK RAKRIIANRQ 180 SAARSKERKA RYITELERKV QTLQTEATTL SAQLTLFQRD TTGLSAENAE LKIRLQAMEQ 240 QAQLRDALND ALKQEVERLK IATGEMSKSN EQFNMGMQHI SYSPSFFQLS EQHTVQQHGN 300 IQLPHHFQQP PPNVPSHQML SHPNSLSDMM QQDSLGRLQG LDIGKGSMAV KSEAEVVVKS 360 EGSSISAGIF FIPFVISS*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU964870 | 0.0 | EU964870.1 Zea mays clone 282242 transcription factor RF2b mRNA, complete cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Dai S,Zhang Z,Bick J,Beachy RN
Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] - Liu Y,Dai S,Beachy RN
Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] - Dai S, et al.
Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]
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