![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.002G408500.1.p | ||||||||
Common Name | Sb02g042230, SORBIDRAFT_02g042230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 414aa MW: 43040.9 Da PI: 4.759 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.8 | 7.1e-06 | 13 | 54 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 e++ C+ + + ++ +C+ ++ lC C + H g H Sobic.002G408500.1.p 13 EAPACESCTSLPAVVYCRADSARLCLPCDRHVH-GanavstrH 54 6789**************************999.435565555 PP | |||||||
2 | CCT | 62.2 | 1.7e-21 | 369 | 409 | 3 | 43 |
CCT 3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 ++RYkeKrk+R+F+K+irYesRKa+A+ R R+KGrF+k+ Sobic.002G408500.1.p 369 TVISRYKEKRKNRRFDKQIRYESRKARADGRMRIKGRFAKS 409 5689***********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.2E-10 | 12 | 59 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.267 | 12 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.58E-7 | 15 | 59 | No hit | No description |
PROSITE profile | PS51017 | 15.021 | 367 | 409 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.3E-16 | 369 | 409 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 414 aa Download sequence Send to blast |
MSSAAADAAS GKEAPACESC TSLPAVVYCR ADSARLCLPC DRHVHGANAV STRHVRAPLC 60 SGCRATATVT AGGGTFLCAN CHFGSEEEEG RHRDGDDPQP LHHDRAAVEG YVGCPSIAEL 120 AAILGVAGYD EKAAAAGNGG WWPASAWEDP QVLRLEDVIV PTTSCHGLQP LLTPPSPENR 180 SSGGEMADEV VRQLGELAKL EATVAAAYAE MEPADGEQLP PWASPELAIG HADFGALDAG 240 AAWHDAATIA AVPSTEEQEA WIAAGCDVDA AGRTDEEARE HAALAPAPAE PCLSSFVEMS 300 EICPGSVVTL SHGGVGGGGT ADVDNSGKTD AETAPRPQLA PTAPVLVAVP VPVTEKMGGY 360 DVAYPDRGTV ISRYKEKRKN RRFDKQIRYE SRKARADGRM RIKGRFAKSG GEV* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.002G408500.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT017925 | 3e-74 | BT017925.1 Zea mays clone EL01N0519E10.c mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002463352.1 | 0.0 | zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | C5X4V2 | 0.0 | C5X4V2_SORBI; Uncharacterized protein | ||||
STRING | Sb02g042230.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3759 | 22 | 22 | Representative plant | OGRP7906 | 8 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47890.1 | 1e-24 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.002G408500.1.p |
Entrez Gene | 8074410 |