PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G408500.1.p
Common NameSb02g042230, SORBIDRAFT_02g042230
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CO-like
Protein Properties Length: 414aa    MW: 43040.9 Da    PI: 4.759
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G408500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.87.1e-061354237
              zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                          e++ C+ + + ++  +C+ ++  lC  C  + H g       H
  Sobic.002G408500.1.p 13 EAPACESCTSLPAVVYCRADSARLCLPCDRHVH-GanavstrH 54
                          6789**************************999.435565555 PP
2CCT62.21.7e-21369409343
                   CCT   3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                             ++RYkeKrk+R+F+K+irYesRKa+A+ R R+KGrF+k+
  Sobic.002G408500.1.p 369 TVISRYKEKRKNRRFDKQIRYESRKARADGRMRIKGRFAKS 409
                           5689***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.2E-101259IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2671259IPR000315B-box-type zinc finger
CDDcd000215.58E-71559No hitNo description
PROSITE profilePS5101715.021367409IPR010402CCT domain
PfamPF062031.3E-16369409IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSSAAADAAS GKEAPACESC TSLPAVVYCR ADSARLCLPC DRHVHGANAV STRHVRAPLC  60
SGCRATATVT AGGGTFLCAN CHFGSEEEEG RHRDGDDPQP LHHDRAAVEG YVGCPSIAEL  120
AAILGVAGYD EKAAAAGNGG WWPASAWEDP QVLRLEDVIV PTTSCHGLQP LLTPPSPENR  180
SSGGEMADEV VRQLGELAKL EATVAAAYAE MEPADGEQLP PWASPELAIG HADFGALDAG  240
AAWHDAATIA AVPSTEEQEA WIAAGCDVDA AGRTDEEARE HAALAPAPAE PCLSSFVEMS  300
EICPGSVVTL SHGGVGGGGT ADVDNSGKTD AETAPRPQLA PTAPVLVAVP VPVTEKMGGY  360
DVAYPDRGTV ISRYKEKRKN RRFDKQIRYE SRKARADGRM RIKGRFAKSG GEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G408500.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0179253e-74BT017925.1 Zea mays clone EL01N0519E10.c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463352.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLC5X4V20.0C5X4V2_SORBI; Uncharacterized protein
STRINGSb02g042230.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37592222
Representative plantOGRP7906812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-24B-box type zinc finger protein with CCT domain