PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G397650.1.p

Common Name

Sb03g018690, SORBIDRAFT_03g018690

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 273aa MW: 30923.6 Da PI: 6.4364

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G397650.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.9	1.4e-12	122	209	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkle....le 84 kfY+ YA+evGF ++ ++k +++ C++eg+++ kkk+e + r +++++t+C k+k+k+ + ++k e++ + l Sobic.002G397650.1.p 122 KFYSIYAEEVGFGLCYGNNKP-------YSYIIHCNNEGNNTYFKKKEELRVRDNTSKKTHCMSKMKLKRIYdENKEEIAVVIeyvdLM 203 6************998655.......58999**********999*****************997666555443333339 PP FAR1 85 HnHela 90 HnH+++ Sobic.002G397650.1.p 204 HNHPCF 209 ***976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-7	122	209	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MSCQKQLFGE ERNCEGVVPE SSASWRAQTT ELAVGQSHDG APAANSEAGT SCRADRSEDV 60 VAGISETKTS SSRCRFSQMA TVTADEIATP DAEKKYTHKE DIDPALIPRP GMSFRNREEA 120 RKFYSIYAEE VGFGLCYGNN KPYSYIIHCN NEGNNTYFKK KEELRVRDNT SKKTHCMSKM 180 KLKRIYDENK EEIAVVIEYV DLMHNHPCFK KKQETINLSE HKEKDPVFLE FVDDLQAADV 240 PHHSIQNIVR DMHGGGEHVP ITKRDLENRQ LM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G397650.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	C5X426	0.0	C5X426_SORBI; Uncharacterized protein
STRING	Sb03g018690.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43
Representative plant	OGRP30	12	351

Link Out ? help Back to Top
Phytozome	Sobic.002G397650.1.p
Entrez Gene	8074941