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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G395600.1.p |
Common Name | Sb02g041070, SORBIDRAFT_02g041070 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 571aa MW: 60675.6 Da PI: 5.8403 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G395600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 46.2 | 9.7e-15 | 115 | 175 | 3 | 63 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
e kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a+lk+++
Sobic.002G395600.1.p 115 EAKRRARLVRNRESAHLSRQRKKQYVEELEGKVKAMQATIADLSARISCVTAENAALKQQL 175
78********************************************************985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0016021 | Cellular Component | integral component of membrane |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 571 aa
Download sequence Send
to blast |
MAEPALLAPD PFADLPFPEF QAPVDGDTFA FEDFDLEDLD LDLDVDFDLD LFASDGQLSQ 60 PPPLATSSSS AGSPEGGSSS SGGGGGLRNE ESSESSSRSA SGTDGSDKGK GEDDEAKRRA 120 RLVRNRESAH LSRQRKKQYV EELEGKVKAM QATIADLSAR ISCVTAENAA LKQQLGGAAG 180 AAPPLPMPMY PAMYPLPMPW MHPAYPMRGS QVPLVPIPRL KPQQPAPTAA EPPAKKARKT 240 KKVASVSFLG LLCLAMLCGC LISVVHRMYP SVDAGEGAAF GPSHHGRILA VEGPHDNVSD 300 GIDPKPPQSG SETLPALLYL PKNGKHVKIN GNLVIKSIVA SEKASLRLPG YDGTSPQKQK 360 KEETSLAIPG YVTPLEAGEV MESAKGVMKN ELMALAPADG NVYREEDGLL PQWFSEAMSG 420 PLLSSGMCTE VFQFDASPSS AHSNGIIPVY SNTMSNSSQN FTQKLPSACP RTVKNRRISY 480 SETIPLRGST SNDTEHFKTP PKNESFGSTK PVSSVVVSVL ADPREAGDGD GEGRISSKSL 540 SRIFVVVLID SVKYVTYSCV LPFKSHSPHL *
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305|PubMed:22050533}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU973938 | 0.0 | EU973938.1 Zea mays clone 424664 DNA binding protein mRNA, complete cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Oono Y, et al.
Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] - Hu J, et al.
The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] - Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F
A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] - Ohta M, et al.
Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] - Cheng Q, et al.
An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]
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