PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G385300.1.p

Common Name

Sb02g040140, SORBIDRAFT_02g040140

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 267aa MW: 29757.4 Da PI: 6.9579

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G385300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.2	2.2e-06	37	86	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ ++erE+r Rd+ N+ f eL +l ++ + + Ka iL +++ +k+L Sobic.002G385300.1.p 37 KKVHKSEREKRKRDKQNDLFGELGNMLEPD----RQNNGKACILSDTTRILKDL 86 678899**********************97....57788888888888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.3E-10	33	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-11	33	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.67E-4	34	91	No hit	No description
PROSITE profile	PS50888	11.115	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-4	37	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MVPRDRAHSA TTATAAPAEN LVQGPILNNK CEKKAPKKVH KSEREKRKRD KQNDLFGELG 60 NMLEPDRQNN GKACILSDTT RILKDLLSQV ESLRKENNTL KNESHYVALE RNELLDETNV 120 IRGEISELQN ELRMRLEGNP IWSHDTSRSN ITAPHPATTV FTLQHSAHPQ VIATMALPLQ 180 QPAVVEQSYA APRRELQLFP EAAPTEDTEP PQNQGISNNV MRPQARYPPV VTTLPVHVYP 240 VLPRMEDEQC SSGTTSSREE GGVGNR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.8330	0.0	callus\| leaf\| ovary\| panicle

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G385300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT017269	0.0	BT017269.1 Zea mays clone EL01N0312C03.c mRNA sequence.
GenBank	EU962251	0.0	EU962251.1 Zea mays clone 241273 amelogenin precursor like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463230.1	0.0	transcription factor bHLH47
Swissprot	Q69V10	1e-117	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	C5X366	0.0	C5X366_SORBI; Uncharacterized protein
STRING	Sb02g040140.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84
Representative plant	OGRP6793	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	2e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sobic.002G385300.1.p
Entrez Gene	8079362

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]