PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G374300.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 704aa    MW: 80107.3 Da    PI: 7.5486
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G374300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.64e-144480135
                  GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk ++
  Sobic.002G374300.2.p 44 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 80
                          5667777777************************876 PP
2FAR183.14.7e-26114201191
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fYn+YA +vGFsvrks+s+ks++n  ++ rtfvCs+eg+++++k+   +++++r  tr+gC a+l +k + + k++vt+++ +HnH+l
  Sobic.002G374300.2.p 114 EFYNKYAGHVGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKADHNHQL 199
                           6*********************6666.899*************9988..99*************************************9 PP

                  FAR1  90 ap 91 
                           ap
  Sobic.002G374300.2.p 200 AP 201
                           86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.7E-63793IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-104090No hitNo description
Gene3DG3DSA:3.30.50.103.8E-114382IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.84E-84381No hitNo description
PfamPF003201.2E-114479IPR000679Zinc finger, GATA-type
PfamPF031012.1E-23114201IPR004330FAR1 DNA binding domain
PfamPF105514.7E-26324418IPR018289MULE transposase domain
PROSITE profilePS509669.878592639IPR007527Zinc finger, SWIM-type
PfamPF044344.9E-5610638IPR007527Zinc finger, SWIM-type
SMARTSM005753.8E-6614641IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MMHMLVAPDG GGGELQPYGA PPAEQELELL RDNADDGLEG HVRCLRCGIS GNATPHMRRG  60
PDGPRTLCNA CGIAYRKGKM RRMIEAEPPI DEASLAKLVP EVGMEFVSEE KAYEFYNKYA  120
GHVGFSVRKS TSHKSSENIT KVRTFVCSRE GYNRDKKSLE AKKPRLDTRI GCPARLIIKV  180
TPECKYRVTD FKADHNHQLA PPSTMHMLRS QRILTELQSG EAELSDDSVV TPTTKATGDL  240
VVRQVSFLRS ISLLPADYKN YLRSKRMKAM QPGDGGAILK YLQTMQMDNP SFFYTMQIDE  300
DDKLTNFFWA DQKSRDDFNY FSDVLCLDTT YKINGYGRPL VLFLGVNHHK QTIIFGAAML  360
YDESFESYKW LFESFKIAMH GKQPAVALID QSIPLSSAMA AAWPSTTQRI CAWHVYQNSL  420
KHLNHVFQGS KTFAKDFSKC VFGYEDEDEF VFSWRSMLEK YDLRHNEWLS KVFAEKEQWA  480
LAYDRHIFCA DIISALQAES FSSILKKFLG PQLELLSFFK HYERAVDEHR YAELQADFQA  540
SQSYPRIPPA KMLKQTAHTY TPVVFEIFRK EFELFMDSVL FSCGEVGTTS EYKVASSEKP  600
KEHFVRFDSS DCSCLCTCRK FEFMGIPCCH MLKVLDYRNI KELPQKYMLK RWRRTAKSAD  660
EDNEGNATNA NGSSLNAPAP PANHHGLQSF SAMIQDASVS NMH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G374300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558180.0BT055818.1 Zea mays full-length cDNA clone ZM_BFb0212N15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309418.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1W0W7F10.0A0A1W0W7F1_SORBI; Uncharacterized protein
STRINGGRMZM2G114461_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-117FAR1-related sequence 5