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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.002G354900.1.p |
| Common Name | Sb02g037650, SORBIDRAFT_02g037650 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
GRAS |
| Protein Properties |
Length: 548aa MW: 60131.9 Da PI: 6.1225 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.002G354900.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 431.6 | 6.2e-132 | 177 | 546 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89
l+elL++cA+av+ ++ +++ ++ +l++ +s +g+p++Rl ay++e+L arla s+s++ykal+++e + ss+ l+++++++e++P
Sobic.002G354900.1.p 177 LKELLIACARAVEYNNSYAIDLMIPELRKKVSVSGEPLERLGAYMVEGLVARLAASGSSIYKALKCKEPR---SSDLLSYMHFLYEACP 262
5799*****************************************************************9...9*************** PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
++kf+++ aN aI eav+ge+r+HiiDf i qG+QW++LlqaLa+Rp+gpp +RiTg++++ s + le +g+rL+++A +vpf
Sobic.002G354900.1.p 263 YFKFGYMSANGAIAEAVKGEDRIHIIDFHIAQGAQWISLLQALAARPGGPPFVRITGIDDSVSAyaRGGGLELVGRRLSHIAGLYKVPF 351
************************************************************888899999******************** PP
GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
+f++ va + +++e +L + pgEa+aVn+ l+lh+++de+vs++++rd++L+lvk+lsPkv+++veqe+++n+++F++rf+e+l+yy+
Sobic.002G354900.1.p 352 QFDA-VAISSSEVEEGHLGIVPGEAVAVNFTLELHHIPDETVSTANHRDRILRLVKGLSPKVLTLVEQESNTNTAPFAQRFAETLDYYT 439
****.6888999***************************************************************************** PP
GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
a+f+s++ lpr+++eri++E+++l+reivn+vaceg+er+erhe ++kW++rl++aGF+p pls +++++k+ll+ ++ d y++ e+
Sobic.002G354900.1.p 440 AIFESIDLALPRDDRERINIEQHCLAREIVNLVACEGEERVERHEVFGKWKARLMMAGFRPSPLSALVNATIKTLLQSYSPD-YKLAER 527
********************************************************************************66.****** PP
GRAS 355 sgslvlgWkdrpLvsvSaW 373
+g l+lgWk+rpL++ SaW
Sobic.002G354900.1.p 528 DGVLYLGWKNRPLIVSSAW 546
******************* PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009640 | Biological Process | photomorphogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005829 | Cellular Component | cytosol |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0004871 | Molecular Function | signal transducer activity |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 548 aa
Download sequence Send
to blast |
MADTPTSRMV HPFGDVPRQT PKQFLYSGNS QHLCYPYQSA SDTHVVPQRH CTMRSHSPDA 60
GSEDHDNHKQ YTLDSSATSG CSRHDSPSSQ SVHAGSGSPV SLEDSHSGST NGNGSPVSAS 120
CVTEDPTDLK QKLKDLEAAM LGTDPEIVNS LEISIADQLS LEPEEWKHMM SMPGGNLKEL 180
LIACARAVEY NNSYAIDLMI PELRKKVSVS GEPLERLGAY MVEGLVARLA ASGSSIYKAL 240
KCKEPRSSDL LSYMHFLYEA CPYFKFGYMS ANGAIAEAVK GEDRIHIIDF HIAQGAQWIS 300
LLQALAARPG GPPFVRITGI DDSVSAYARG GGLELVGRRL SHIAGLYKVP FQFDAVAISS 360
SEVEEGHLGI VPGEAVAVNF TLELHHIPDE TVSTANHRDR ILRLVKGLSP KVLTLVEQES 420
NTNTAPFAQR FAETLDYYTA IFESIDLALP RDDRERINIE QHCLAREIVN LVACEGEERV 480
ERHEVFGKWK ARLMMAGFRP SPLSALVNAT IKTLLQSYSP DYKLAERDGV LYLGWKNRPL 540
IVSSAWH*
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| Functional Description ? help
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| Source |
Description |
| UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT063928 | 0.0 | BT063928.1 Zea mays full-length cDNA clone ZM_BFc0120M18 mRNA, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Day RB, et al.
Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
Plant Mol. Biol., 2004. 54(2): p. 261-72
[PMID:15159627] - Tanabe S, et al.
The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
[PMID:26287768]
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