PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G332750.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 600aa    MW: 67795.7 Da    PI: 6.7325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G332750.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-125499555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          + e+Er+RR ++N  + eLr+++P+      +K+sK ++L  A+++Ik+Lq
  Sobic.002G332750.1.p 54 NLEAERKRRGKLNRNILELRSVVPNI-----TKMSKESTLSDAIDHIKKLQ 99
                          5689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-1649113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.4724998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-1151102No hitNo description
Gene3DG3DSA:4.10.280.103.4E-1352110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-105399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1355104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF032243.2E-7234281No hitNo description
SuperFamilySSF483714.74E-99237598IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.101.2E-10237282IPR011989Armadillo-like helical
Gene3DG3DSA:1.25.10.101.1E-58306487IPR011989Armadillo-like helical
PfamPF032241.1E-48309479No hitNo description
PfamPF116981.4E-38485597IPR011987ATPase, V1 complex, subunit H, C-terminal
Gene3DG3DSA:1.25.40.1505.5E-39499598IPR011987ATPase, V1 complex, subunit H, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015991Biological ProcessATP hydrolysis coupled proton transport
GO:0000221Cellular Componentvacuolar proton-transporting V-type ATPase, V1 domain
GO:0016820Molecular Functionhydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MPRRQRARSS EELKAEDFVD SVLNFGGGGV GDEDDEEKEA GGDSQPPAEF KSKNLEAERK  60
RRGKLNRNIL ELRSVVPNIT KMSKESTLSD AIDHIKKLQN QVLELQRQLA DSPGEAWEKQ  120
GSASCSESFT ATENMPYQGQ IELVPLGPYK YHLRIFCKKT GVFTKVLEAL CSYNAQVTSL  180
NTITFYGYAE SVFTIEVKGE QDVVMVDLRS LLSNIVEGRR VDGAWTAPVM DRAELTTEQV  240
LKRDIPWEHY MSTKLISGTC LQLLRRYDHK PESQRAPLLE ETLLYFDYSA RPKLQNGTLP  300
NGDASNSKSK LTSIHDVLRG LVDWLCSQLR NPTHPSCSIP TSIHCLSTLL REPYVRTLFV  360
QADGIKLLIP LISPASTQQS IQLLYETCLC IWLLSFYDAA VDYLSTTRVM PRLVEVVKGS  420
TKEKVVRVVV LSFRNLLAKG AFAAQMIDLG LPQIVQNLKA QAWTDEDLLD ALNQLEVGLK  480
ENLKKLSSFD KYKQQVLLGH LDWSPMHKDP SFWRENINNF EENDFQILRV LMTIIDTSSD  540
TTALAVACYD LSQFLQYHPS GRIVVADLKA KDRVMKLMNH ENTEVRKNAL LCVQRLFLGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ho8_A2e-18353597214475VACUOLAR ATP SYNTHASE SUBUNIT H
3j9t_P2e-18353597212473V-type proton ATPase subunit H
3j9u_P2e-18353597212473V-type proton ATPase subunit H
3j9v_P2e-18353597212473V-type proton ATPase subunit H
5bw9_h2e-18353597212473V-type proton ATPase subunit H
5d80_h2e-18353597212473V-type proton ATPase subunit H
5vox_P2e-18353597212473V-type proton ATPase subunit H
5voy_P2e-18353597212473V-type proton ATPase subunit H
5voz_P2e-18353597212473V-type proton ATPase subunit H
6o7v_P2e-18353597212473V-type proton ATPase subunit H
6o7w_P2e-18353597212473V-type proton ATPase subunit H
6o7x_P2e-18353597212473V-type proton ATPase subunit H
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.590.0callus| panicle| pollen| root
Functional Description ? help Back to Top
Source Description
UniProtSubunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G332750.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396600.0BT039660.1 Zea mays full-length cDNA clone ZM_BFc0037H01 mRNA, complete cds.
GenBankBT0560500.0BT056050.1 Zea mays full-length cDNA clone ZM_BFc0160M07 mRNA, complete cds.
GenBankBT0677940.0BT067794.1 Zea mays full-length cDNA clone ZM_BFc0160M01 mRNA, complete cds.
GenBankEU9728130.0EU972813.1 Zea mays clone 388497 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460834.10.0probable V-type proton ATPase subunit H
SwissprotQ84ZC00.0VATH_ORYSJ; Probable V-type proton ATPase subunit H
TrEMBLA0A1W0W6X50.0A0A1W0W6X5_SORBI; Uncharacterized protein (Fragment)
STRINGGRMZM2G163233_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP491455
Representative plantOGRP1398044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.16e-21bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]