PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G320500.1.p
Common NameSb02g034880, SORBIDRAFT_02g034880
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 821aa    MW: 85653.3 Da    PI: 9.8811
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G320500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.5e-10203247244
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                           ++W++eEd  l+ +v+++G g+W+ I ++ +   +Rt+ q+  rw
  Sobic.002G320500.1.p 203 KAWSKEEDADLAAGVQKYGEGNWEDILHRCNfdSTRTPDQLSQRW 247
                           58******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-11196248IPR009057Homeodomain-like
PROSITE profilePS5129410.383197255IPR017930Myb domain
SuperFamilySSF466896.89E-12199249IPR009057Homeodomain-like
SMARTSM007174.1E-6201253IPR001005SANT/Myb domain
PfamPF002495.4E-9203247IPR001005SANT/Myb domain
CDDcd116604.46E-17203247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MAAVAPAAGK GKRKRQLSED DVYLLLHRYA PGTILTALQE VAQHAEGRRI DWKAVVGKSA  60
TGITSAREYQ MLWRHFAYHH DLEDSVDAGD QPLGDDSDLE LELEPNPIPT KEALSEASAL  120
AKALISGSSR EQASGHRINL DPPVLNTQNE KIVRVPSEKQ LAQSHCITNV TGPVANSKQL  180
SHIGPSPSHL DPNGASKKRK KPKAWSKEED ADLAAGVQKY GEGNWEDILH RCNFDSTRTP  240
DQLSQRWALK RPGGSTKPAS TKHASVGSEE RSAALKALSL AVGPMRRTGA YQQSIQHKST  300
AFAPKMPEVR SAATPSPALA LPVPVPVAMP LRVAAQVQTP LHQGQQASVQ AAPPKLSNAS  360
NKTRKKQAAQ PSPTIGPSSI QAAAIAAGGR LATASTAASF LKAAQSKNVV HIKSLGATSL  420
KSSASSKASI VVEHGTQPGG SQHLEPLNPR AVHGVSGVTV VNQSGPPAGA RSLETKKALS  480
TTLAPVPCEE DDSEFCVITI DDLFPEDAKE PEVVDVMQPE TVDTKAKQPE TTGLKAKLPE  540
NTDPKAMQQE TMDPKSKQPD TLEVEIVDPK DKDMLEFDQY VASQGGHLNT DELNKSKCTD  600
SASQAQGLVG SQKKPQNLIP ADGKGNPVTV VGKVKPVTAG VAATGKKTKI PVSHSAAGTP  660
RGIVDTVNAN APNKTLVRRA ATPVPACCQA SPLKHAMNTK GNQMTTSNAT VFSCGVPASS  720
QTSKVAEGAS KANPPSSSSQ AKPNGVAVNG ANKVVNPPSI NQASAAVNNT NRAAIPLSSS  780
QASPTIDGAN RVANPPPSNQ ASTAVNGAAN KGNPPAAARQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196200KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G320500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9709500.0EU970950.1 Zea mays clone 354478 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462936.10.0uncharacterized protein LOC8084050
TrEMBLC5XA310.0C5XA31_SORBI; Uncharacterized protein
STRINGSb02g034880.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.12e-19MYB_related family protein