PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G316600.10.p | ||||||||
Common Name | Sb02g034560, SORBIDRAFT_02g034560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | FAR1 | ||||||||
Protein Properties | Length: 783aa MW: 89362.1 Da PI: 6.7492 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.1 | 5.2e-22 | 54 | 140 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y++Y++++GFsvrk k+++ +++i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+l Sobic.002G316600.10.p 54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPVHNHQL 139 7********************9*******************99988..9999***********************************9 PP FAR1 90 a 90 a Sobic.002G316600.10.p 140 A 140 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.2E-20 | 54 | 140 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.8E-33 | 261 | 354 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.186 | 542 | 578 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.7E-6 | 544 | 575 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 7.6E-6 | 553 | 580 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 783 aa Download sequence Send to blast |
MDCSQDSQEE SHQRRENGEE AEKAADYGNA LSRKEATEEL LGCVVHSEEE AYRLYCDYGH 60 RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV 120 DEKGRWTVIR FVPVHNHQLA KPGERHMLRS AKSLAVGKSG VIDPSASTES HPINGFSDMT 180 GDIAENSGYT IRECYNQVCM QNITIIEAGD SQSLVSYFKR RTNEEGMFYW DVQVDQEGRM 240 TNFFYRDGKS RNDYGCFGDA IIFDTTYRTN KYNLICAPFV GVDHHWQNVV FGCAFLLDES 300 VTSYAWVFKS FLESMGGRSP KSIFTDQDEA IMQAVEQVFP NTQHCFSYWH IVKNAQSHLG 360 SLNTSQAFQS MFTKCMQGSD SEEDFKESWT AMIQEYKLQD NSWLIDLYAF HRKWCSAFNK 420 DTFDGGINSS QWGEVSSNIF NGISDENTSL TRFALLLEKV VKDLRRNESE EDFRCSQTAP 480 VRAIKHSTVL KQAAESYTHR IYKLFEAEFL DGCGATSCHE TSSGGNLLRF GITMQGRGSK 540 VWDVVLDTST MEISCGCRKF ERMGLLCSHA LKVFTLQNVD TIPEKYVLKR WTKDARRSMY 600 TLAQDDSTQQ ECTEAELAYR NRAMQYAYNL IIKSQELEES RKIFWDSLET GEKALEVFFE 660 MRNMRTQAAK DANKNEKKKK KTSKGPNPKK AKQAPGVSST DLELIVQTNE HQFQSSQDAQ 720 GNATIGRPYY YQVPQTFPNA PIQPNQMYMH PNMHTVPLCT PQQDLSAFAI RPNSTFGGAK 780 NI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 685 | 692 | PNPKKAKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.12815 | 0.0 | callus| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G316600.10.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021309422.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9 isoform X1 | ||||
Refseq | XP_021309423.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9 isoform X1 | ||||
TrEMBL | A0A1B6QEF4 | 0.0 | A0A1B6QEF4_SORBI; Uncharacterized protein | ||||
STRING | Sb02g034560.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-100 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G316600.10.p |
Entrez Gene | 8080743 |